PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0069s0060.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

C2H2

Protein Properties

Length: 302aa MW: 33115.4 Da PI: 6.5854

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0069s0060.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	5.9e-06	120	142	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F r nL+ H r H Mapoly0069s0060.1.p 120 FTCEVCGRGFQREQNLQLHKRGH 142 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.16E-6	120	142	No hit	No description
SMART	SM00355	0.0038	120	142	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.4E-5	120	142	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.676	120	142	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	122	142	IPR007087	Zinc finger, C2H2
SMART	SM00355	200	163	193	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.16E-6	193	218	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MLGEVESVTD KMASSSCTSP SVNEPMSGTE PTSADSVSEE ELSLDVKPII VETTQAPSCT 60 ELVSVQLPAI NTTTTSATLN VQNNEKQQGV KRKRNLPGTP DPDAEVVALS PKTLMATHKF 120 TCEVCGRGFQ REQNLQLHKR GHNLPGSLKP RANKDKEIRK KVYVCPEPTC VHHDPARALG 180 DLTGIKKHFC RKHGEKKWKC DKCCKKYAVL SDWKAHSKTC GTRDYKCECG SIFYRRDSFV 240 THKAFCDELA EESARLAAGS SEPPAPVLLL DAMPPEDKDE PVSYRQLLGE DDIDDNDQAG 300 A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-30	194	258	3	67	Zinc finger protein JACKDAW
5b3h_F	1e-30	194	258	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.
UniProt	Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024390144.1	1e-102	protein indeterminate-domain 2-like isoform X6
Swissprot	Q944L3	1e-100	IDD9_ARATH; Zinc finger protein BALDIBIS
Swissprot	Q9ZWA6	1e-100	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	A0A2R6WPE7	0.0	A0A2R6WPE7_MARPO; Uncharacterized protein
STRING	ERN01511	1e-101	(Amborella trichopoda)
STRING	PP1S43_228V6.1	1e-101	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP95	16	242

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	7e-93	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Mapoly0069s0060.1.p

Publications ? help Back to Top
Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]