PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0068s0079.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 620aa    MW: 68814.3 Da    PI: 8.1152
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0068s0079.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.6e-06263287123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          y+C+   C+k+Fs +s LkrH   H
  Mapoly0068s0079.1.p 263 YVCHweGCTKRFSERSKLKRHFLIH 287
                          9********************8877 PP
2zf-C2H2188.2e-06293317123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          + C    Cgk Fs   nL++H++tH
  Mapoly0068s0079.1.p 293 FICVyeGCGKAFSLDFNLRSHMKTH 317
                          6788889*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.44E-5231270No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5234259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552234258IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785234258IPR007087Zinc finger, C2H2
PROSITE patternPS000280236258IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-14261285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0011263287IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.96263292IPR007087Zinc finger, C2H2
PROSITE patternPS000280265287IPR007087Zinc finger, C2H2
SuperFamilySSF576675.9E-15274324No hitNo description
Gene3DG3DSA:3.30.160.602.6E-21286320IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0055293317IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.277293322IPR007087Zinc finger, C2H2
PROSITE patternPS000280295317IPR007087Zinc finger, C2H2
SMARTSM003552.4322347IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4322345IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280324347IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MSLAGLGGMP NYAKTEPVVS MDDEPKTVEK NLATCKVEDI SVLESKVGHS SFGNEIDRTV  60
EEKRTRICVE SRGERRLQVK VDEGAASGES GPRSTGGGRE RCRGCGVREE PRKNELCESC  120
KQEGSGNFEG KVTRSSTRRR LGVQPVTPRL EEPRAVRANR GMKRRFPGAV SGDESDDNCD  180
KRKRTRVRSI SKVCGPNAQQ QSGSETSGKG KEAIDKDWKP SVRGKRRGRQ SEVFLCNVEG  240
CEKSFVDAVA LYNHGRVHGD RPYVCHWEGC TKRFSERSKL KRHFLIHTGE KPFICVYEGC  300
GKAFSLDFNL RSHMKTHTGE YHECPHPGCE KRYCQEYKLR AHICKEHKGA GKSSDNGGRL  360
AKEDSVISSN DKAAKKKERA EQLELRRAKL EKCKEGKRKR IQELEAELEG EMKELTKLDK  420
ALRKVTREQE EEEFEGCVEQ DLLSDNAGEA ELGEVYGEEK EVVMFAHKLP TADQGARLMN  480
QVVLIQGPTP PLSPSISSSQ PFLMSRVSTL DSTSPTESGL HSHHSTHLLP YSVTPICQLS  540
MDSLFGDRRN SQNLVSFVGS QGLSMSKDRL GDPHGGGVSQ AFSANCQSSI SFIHGEQSSQ  600
CEPPVSQLFT YQEQPCLQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C4e-292363438114PROTEIN (YY1 ZINC FINGER DOMAIN)
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162183KRRFPGAVSGDESDDNCDKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WPT10.0A0A2R6WPT1_MARPO; Uncharacterized protein
STRINGPP1S577_1V6.13e-90(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1529224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.22e-46C2H2 family protein