PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0064s0023.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family GRAS
Protein Properties Length: 741aa    MW: 80469.7 Da    PI: 4.7292
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0064s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.95.4e-1363747381373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          lv+lLl+cA+a +++++ela  +L +l + as +gd+mqR+aayf+e+Laar+++  s +y++l  ++++     + l+a++++++v P+
  Mapoly0064s0023.1.p 374 LVNLLLKCADAAAKDNAELAAGILGELYQGASLYGDSMQRVAAYFAEGLAARIVSRDSAMYSSLMLRPST----GDYLSAFTTLYKVAPY 459
                          689***************************************************************9997....8999************ PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          ++f+h+taNqaIleaveg ++vH++D+di+qG+QWp+L+qaLasRp+gpp+lRiTgvg+    + + l+etg+rLa+fA++++v+fef+ 
  Mapoly0064s0023.1.p 460 FQFAHFTANQAILEAVEGRSAVHVVDLDIMQGFQWPSLIQALASRPGGPPHLRITGVGK----HGDILHETGRRLASFAQSFDVSFEFQC 545
                          ***********************************************************....9************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLk.lvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          lva++le+l +e+++ + gEa+aVn++lqlhrll +++s e+  +++++ l ++l P v+++veqea+hns++Fl rf+eal+yy+a+fd
  Mapoly0064s0023.1.p 546 LVAEKLECLAPEAFAPRAGEATAVNSILQLHRLL-NPTSGEK-LHAFVRsLCRDLHPCVLTIVEQEANHNSATFLGRFMEALHYYAAVFD 633
                          **********************************.6666666.6777762679************************************* PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          sl+a+lp+++eer+k+E+ +++++i+n+vaceg+er+erhe +  Wr+++e+aGF ++pls++a +qa+lll+ ++ +gyr++e+s+  v
  Mapoly0064s0023.1.p 634 SLDASLPQQNEERVKIEQLFFAQQIKNIVACEGDERVERHEPVDLWRKKMEMAGFYQIPLSSYAISQARLLLQFCPCEGYRLHERSEGSV 723
                          ***********************************************************************************9966666 PP

                 GRAS 360 .lgWkdrpLvsvSaW 373
                           lgW++r+L+++SaW
  Mapoly0064s0023.1.p 724 sLGWQERQLLTASAW 738
                          6************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.115348718IPR005202Transcription factor GRAS
PfamPF035141.9E-133374738IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MPPFANELDA ISRDVQHQQH QQQQEDLEHA DGVVLEREFP KYTIFFKINE PHKEEVAHCE  60
QMVEVLQTAQ ILHGIRSESI GKLTRADISV WNPWSSAVAM GSSQDLLPGF EARSSEENHG  120
AEDEDDEDDD EAQAQAQAQG DRQQLGSLLS GPLSPAAQAP GRKRSLCSML ESDDWLRSCT  180
TSSESDPAAS GGSGGGGEEL DHESSDGPNK LAKTDQFQSF DRKIDRDLLS LSLPNSTTLS  240
ESSTTSSSRG SDAQQQAQAP LDDLDDPAFR SAPLLSLVTD GSSCPDRLAP AQARPAGAGG  300
TSIRSFADAA AVRLTLSSSP SPSLSLSGGP RHEGKNGTRG PLHPLGGLDA SRLNEHSLLM  360
LDSDTGLEAH GLQLVNLLLK CADAAAKDNA ELAAGILGEL YQGASLYGDS MQRVAAYFAE  420
GLAARIVSRD SAMYSSLMLR PSTGDYLSAF TTLYKVAPYF QFAHFTANQA ILEAVEGRSA  480
VHVVDLDIMQ GFQWPSLIQA LASRPGGPPH LRITGVGKHG DILHETGRRL ASFAQSFDVS  540
FEFQCLVAEK LECLAPEAFA PRAGEATAVN SILQLHRLLN PTSGEKLHAF VRSLCRDLHP  600
CVLTIVEQEA NHNSATFLGR FMEALHYYAA VFDSLDASLP QQNEERVKIE QLFFAQQIKN  660
IVACEGDERV ERHEPVDLWR KKMEMAGFYQ IPLSSYAISQ ARLLLQFCPC EGYRLHERSE  720
GSVSLGWQER QLLTASAWSC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-8838073925379Protein SCARECROW
5b3h_A1e-8838073924378Protein SCARECROW
5b3h_D1e-8838073924378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398966.11e-162scarecrow-like protein 1
RefseqXP_024399048.11e-162scarecrow-like protein 1
SwissprotG7L1661e-114RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A2R6WR830.0A0A2R6WR83_MARPO; Uncharacterized protein
STRINGPP1S63_181V6.11e-162(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP53661322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-87RGA-like 2
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]