PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0061s0023.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 384aa    MW: 43992 Da    PI: 8.6371
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0061s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000147395123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y C+ C++  s + +L +H+r+H
  Mapoly0061s0023.1.p 73 YNCQECDYAASKPALLIQHLRSH 95
                         89********************9 PP
2zf-C2H2224.1e-07101125123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          ++Cp   C+ +++r+++L+rH++ H
  Mapoly0061s0023.1.p 101 FSCPvsGCPSTYKRQDHLNRHMKIH 125
                          89*********************99 PP
3zf-C2H219.62.5e-06130154123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          ++C+   C++sFs   nL+rH++ H
  Mapoly0061s0023.1.p 130 FSCTipGCDRSFSMMTNLTRHLKYH 154
                          789999*****************98 PP
4zf-C2H213.30.00024171196123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          +kC    C k F+ +s+L++H  + H
  Mapoly0061s0023.1.p 171 HKCLnpGCEKIFRYQSELRSHEDNvH 196
                          6788889**************88777 PP
5zf-C2H216.72e-05261285223
                          EET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                          +Cp   C+ +++r snL++Hir+ H
  Mapoly0061s0023.1.p 261 TCPyeGCTHHYTRESNLRSHIRSfH 285
                          69999*****************999 PP
6zf-C2H212.60.00042291314122
                          EEET..TTTEEESSHHHHHHHHHH CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt 22 
                          ++C+   C+ksF +k   krH ++
  Mapoly0061s0023.1.p 291 FVCSfeGCDKSFAHKAARKRHEMS 314
                          89*******************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.4E-97196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.36273100IPR007087Zinc finger, C2H2
SMARTSM003550.0417395IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.06E-1187128No hitNo description
Gene3DG3DSA:3.30.160.604.7E-1497128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.074101130IPR007087Zinc finger, C2H2
SMARTSM003551.1E-4101125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280103125IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-7130156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001130154IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.57E-5130192No hitNo description
PROSITE profilePS5015711.448130159IPR007087Zinc finger, C2H2
PROSITE patternPS000280132154IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-5166192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.11171196IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411171197IPR007087Zinc finger, C2H2
PROSITE patternPS000280173196IPR007087Zinc finger, C2H2
SMARTSM003550.32203228IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280205228IPR007087Zinc finger, C2H2
SMARTSM003555.6231252IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.14E-6242296No hitNo description
Gene3DG3DSA:3.30.160.604.0E-7245283IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.12260285IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076260290IPR007087Zinc finger, C2H2
PROSITE patternPS000280262285IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-8289312IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.42E-5289312No hitNo description
PROSITE profilePS501579.681291324IPR007087Zinc finger, C2H2
SMARTSM003550.021291317IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280293317IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSCRVDDPKR KRHELIGLGL PEVPQEHDSQ AATYEHVKHL NEKMEAEEME QDYPTESSDE  60
EMPKIKKREE KKYNCQECDY AASKPALLIQ HLRSHSEQKP FSCPVSGCPS TYKRQDHLNR  120
HMKIHDGARF SCTIPGCDRS FSMMTNLTRH LKYHAEKSIF PKPKSSGEKK HKCLNPGCEK  180
IFRYQSELRS HEDNVHSIVF AEHVCIYPGC GEKLTSEAAL LKHAVEAHPY LLCEVCGETI  240
TRQAYRRHVR SHGTKKPVKV TCPYEGCTHH YTRESNLRSH IRSFHLKLKP FVCSFEGCDK  300
SFAHKAARKR HEMSVVHCHT GTDFEAAELA ESSKSKGGRK KVCFEKVEDL YIRRAKKVSS  360
SRAKGQHHHI DSQGEEEMKI GTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-137025619188Aart
2i13_B1e-137025619188Aart
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WSB30.0A0A2R6WSB3_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29811627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.22e-54transcription factor IIIA