PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0055s0052.2.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

bHLH

Protein Properties

Length: 260aa MW: 29209.5 Da PI: 7.2814

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0055s0052.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.9	0.0001	139	177	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L++l+ + +K + a++L +A+ YIk Lq Mapoly0055s0052.2.p 139 RKEKLGERITALQQLVSPF-----GKTDTASVLLEAIGYIKFLQ 177 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.407	127	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.46E-12	137	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0024	138	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.99E-6	139	181	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-8	141	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MDYSSHFIIP PQAHLTSNSH MSPLQWANAP DAAHHASLLQ HCSDYQQQQQ QQQQQQLEIA 60 HHQQQQDQHP HLLRQAKSHV NHLADSHEDS RDSKRPAPSM GAQEELANSE AFIKRPRLEQ 120 QQQQQQQQTP NVPFKMQVRK EKLGERITAL QQLVSPFGKT DTASVLLEAI GYIKFLQEQV 180 QVLSTPYMKS NVGPSSMHHD NPHDVSKMGW ASTKVKSQDD ARQDLRSRGL CLVPVSCTLQ 240 VANDNGADFW TPAIGGSCR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024537458.1	1e-59	transcription factor bHLH68 isoform X1
Swissprot	Q8S3D1	4e-39	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A2R6WV93	0.0	A0A2R6WV93_MARPO; Uncharacterized protein
TrEMBL	A0A2R6WVB1	0.0	A0A2R6WVB1_MARPO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	8e-41	bHLH family protein

Link Out ? help Back to Top
Phytozome	Mapoly0055s0052.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]