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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0055s0046.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | FAR1 | ||||||||
Protein Properties | Length: 544aa MW: 61777.6 Da PI: 9.8418 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 32.6 | 2.6e-10 | 35 | 121 | 10 | 90 |
FAR1 10 vGFsvrkskskks..krngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 GF ++++++++ k++g i+ ++Cs+ ++ + + + +++++r r + +gC+ + ++++++ +w v ++eHnH+l+ Mapoly0055s0046.1.p 35 EGFVLTIKHTRRVgnKKDGDIKAVVLYCSCGAQQPRPQPQaeaeQQQRKRVRGSRGIGCTFNCTIRRQNGTEWAVFFDDKEHNHALF 121 59**99*999998889*************988776665555665666667788889*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-8 | 35 | 121 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.6E-7 | 267 | 302 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MNNLNNLELL GELGERVFAT LDEARAAVDS QLQDEGFVLT IKHTRRVGNK KDGDIKAVVL 60 YCSCGAQQPR PQPQAEAEQQ QRKRVRGSRG IGCTFNCTIR RQNGTEWAVF FDDKEHNHAL 120 FADPSIHPQG RALTPAQRQE VIRLASDGLR PTRIVSTMRR QTVSLTPRDV YNLIQAERNR 180 NLASRSPLQA LLDNLERNKA EAPYFTQFDN QQRLTHLFIV SPSAKEVCSK FSARKIWLID 240 STYKTNRFGL LLMHVLVARV LEQFGVIPST FVTDRELALM NSLDNVFPDA DFLLCRWHIS 300 KNITAKHRLS FDSLEAFQEL LKQWNALVFS ITVACYEQQL EAMQEMFPLH VMTYLETTWL 360 VYKERFVACF LRGKLHFGHT TTSRVESAHS AMKKWISVST VMGKISIAGL KSAFQQFKLR 420 LENSGHACQG LFSSNLGHPC KHWFPPAIAA ELKIEDALGQ VHEEYNNASI YHQRVILDHI 480 ATLPTANVLT VLRGRGRPAR FLERPQRATS TSTQRNPSQF EVVEASVRPQ RRCGRCRQSG 540 HNA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU694306 | 0.0 | CU694306.7 H.parasitica DNA sequence from clone HpEmoy2-3N4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6WV90 | 0.0 | A0A2R6WV90_MARPO; Uncharacterized protein | ||||
STRING | CCA20948 | 1e-105 | (Albugo laibachii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-14 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0055s0046.1.p |