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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Mapoly0054s0021.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family |
bHLH |
Protein Properties |
Length: 383aa MW: 42993.2 Da PI: 4.5578 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Mapoly0054s0021.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 38 | 2.9e-12 | 173 | 216 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+Er+RR+++N+++ Lr l+Pk +K++ a+iL A+eY+++Lq
Mapoly0054s0021.1.p 173 VAERKRRKKLNERLYALRALVPKI-----TKMDRASILGDAIEYVRELQ 216
68*********************7.....7******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 383 aa
Download sequence Send
to blast |
MVLSPEASLS SGSTREVERT LDKKDGKSFY NPGGEGCSRN FELDPHSENP WSTPSEIWEQ 60 EEALMNSQTQ MQLNFLDQKD VPLGGLGHPY EELVPGNQTL HDIIMPAAGV QSLRTSLGGD 120 AFGDALSKES GDREIKQEMR ADSSDGSDPM DEDEDKGGSG SRSGRRHLSK NLVAERKRRK 180 KLNERLYALR ALVPKITKMD RASILGDAIE YVRELQARVD CLQKELLDDE EILNVDAILE 240 DGNREGCFED IKTSEPRLDI IPEEQQIENL VQPMEVYVHK LDEAVFTVRI ISEKSEGMFL 300 GVLRIMDEYG FDILHANIIT HRGIALHVFR AEIRDKKTPT IEQVKESLLQ LSKFQFGGFD 360 NPNELVNEPM NIVSSTPDHR QS*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 4e-14 | 174 | 219 | 12 | 57 | Transcription factor MYC2 |
5gnj_B | 4e-14 | 174 | 219 | 12 | 57 | Transcription factor MYC2 |
5gnj_E | 4e-14 | 174 | 219 | 12 | 57 | Transcription factor MYC2 |
5gnj_F | 4e-14 | 174 | 219 | 12 | 57 | Transcription factor MYC2 |
5gnj_G | 4e-14 | 174 | 219 | 12 | 57 | Transcription factor MYC2 |
5gnj_I | 4e-14 | 174 | 219 | 12 | 57 | Transcription factor MYC2 |
5gnj_M | 4e-14 | 174 | 219 | 12 | 57 | Transcription factor MYC2 |
5gnj_N | 4e-14 | 174 | 219 | 12 | 57 | Transcription factor MYC2 |
Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 174 | 181 | ERKRRKKL |