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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0051s0062.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 22596.6 Da PI: 8.8751 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.9 | 3e-42 | 43 | 143 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da+sslvyeA+ar+rdPvyG++g i++lqqq ++l Mapoly0051s0062.1.p 43 PCAACKLLRRRCAQECPFSPYFSPHEPQKFACVHKIFGASNVSKMLMEVPESQRADAASSLVYEANARIRDPVYGCMGAISALQQQAQSL 132 7***************************************************************************************** PP DUF260 91 kaelallkeel 101 +ael+++++e+ Mapoly0051s0062.1.p 133 QAELNAVRQEI 143 *******9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.558 | 42 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.0E-42 | 43 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MSKERETFGL LDSNSRKIRR AEPEKVVRRA MLGPQGQGNS STPCAACKLL RRRCAQECPF 60 SPYFSPHEPQ KFACVHKIFG ASNVSKMLME VPESQRADAA SSLVYEANAR IRDPVYGCMG 120 AISALQQQAQ SLQAELNAVR QEIMRYRCHE NAVAAVMVAG FPPNNDRSTG SGALSSQTSA 180 STDYTVPSPS SVATPDVKER YWTSMN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-48 | 39 | 150 | 7 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-48 | 39 | 150 | 7 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002279029.1 | 6e-78 | PREDICTED: LOB domain-containing protein 15 | ||||
Refseq | XP_007011230.1 | 6e-78 | PREDICTED: LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 2e-67 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A2R6WX81 | 1e-152 | A0A2R6WX81_MARPO; Uncharacterized protein | ||||
STRING | VIT_13s0067g02380.t01 | 2e-77 | (Vitis vinifera) | ||||
STRING | EOY20040 | 2e-77 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 4e-68 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0051s0062.1.p |
Publications ? help Back to Top | |||
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