PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0051s0029.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | Trihelix | ||||||||
Protein Properties | Length: 410aa MW: 45225.4 Da PI: 9.825 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 54.6 | 2.8e-17 | 46 | 134 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++ v +L+e+++++++ ++ g+l+ ++We+v++ m + +g +++ qCk+k+enl+kryk ++e +++ e+ s +p+f++l+ Mapoly0051s0029.1.p 46 EWTDRAVDLLLELYEQKWRGVSFGNLRVKDWEHVASTMderyHWQGERKTFLQCKNKIENLKKRYKLEREKKNDA-GEVMSDWPWFTRLH 134 5*************************************666655677889**********************996.88999*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.4E-18 | 45 | 136 | No hit | No description |
SuperFamily | SSF82657 | 3.27E-26 | 318 | 406 | IPR002634 | BolA protein |
Gene3D | G3DSA:3.30.300.90 | 1.2E-26 | 321 | 407 | IPR002634 | BolA protein |
Pfam | PF01722 | 6.5E-27 | 329 | 405 | IPR002634 | BolA protein |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MAGGGVRVAL PTTPSVTMGG GVLPVGVKET KEGVVVKSEK KKDGNEWTDR AVDLLLELYE 60 QKWRGVSFGN LRVKDWEHVA STMDERYHWQ GERKTFLQCK NKIENLKKRY KLEREKKNDA 120 GEVMSDWPWF TRLHDIIGKA PKQVGLIEDS EGGTLALGLG STVEGPDGEK ECEGEGQGGG 180 LLPQLGIVPI AMRDDSKMRA LTESQISSER ASFMETPPGK DRKQGSTAAC GTRCMQNVPE 240 ISGKSARKRR RNTSVRSPVK DLAASFSNFF NAMAKVEVER MQMLRELISS NTRKRPRISQ 300 APSDNDQCRW CSTSGPSTAP GRNSIHQKLT EALTPTNLEI EDVSVEHAAG LQLGAARTHF 360 NVRVVSTVFE GQSRIQRHRM VYKILQDELK GGVHALSIVA RTPTEAATR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4pui_A | 4e-23 | 325 | 405 | 10 | 95 | SufE-like protein, chloroplastic |
4pui_B | 4e-23 | 325 | 405 | 10 | 95 | SufE-like protein, chloroplastic |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 246 | 250 | RKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A176W032 | 0.0 | A0A176W032_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6WX36 | 0.0 | A0A2R6WX36_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP11635 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.2 | 8e-17 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0051s0029.1.p |