PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0043s0095.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB_related
Protein Properties Length: 968aa    MW: 104726 Da    PI: 8.853
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0043s0095.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.6e-07874923147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Mapoly0043s0095.1.p 874 RRPFSVSEVEALVHAVEKLGTGRWRDVKLRAFdqaKHRTYVDLKDKWKTL 923
                          678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.1E-5592664IPR029071Ubiquitin-related domain
PROSITE profilePS500539.33597662IPR000626Ubiquitin domain
PROSITE profilePS5129415.638869928IPR017930Myb domain
SMARTSM007176.8E-7873926IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-10874924IPR009057Homeodomain-like
CDDcd116601.12E-16875925No hitNo description
SuperFamilySSF466891.42E-14875955IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 968 aa     Download sequence    Send to blast
MEARSRRVGG GFPGYNGPAL PRAMRSSRGR GEAARKATVC GGRAGFFELL ATVAGQILQD  60
DSNGEEQDLS NISGVKLKCS ELKEKDSESY ARISLAKKTL CEPSSIAASC LNSLRAGIRD  120
EEARKHFGLE KEEDESAESA HMVVNRSYVS CSSPETRNQT LLGSDKVVTA RSDCVTVSTP  180
EQKVPEGNKQ MAVSVSDNDE NQTIKSDPES SLSSAIKDAS DSDEMHLETR EPVERLQIPK  240
IEDLEDGDHL DDRKERKFSI RGNEQLIDME IDLPKASVME GSMHYEGHDP VSSTASEATK  300
PEPSSGEVTH LHSCLASREE DALLRDVVRS SKRIIDDTAR SPGDKKPWKR TDPCGKEDEG  360
ESGVEVDDKS IFETRKPLKV TDVILGRLVA EKVGVERGFV SEQILESSRE RILSKDNNNC  420
SSKRNLPENV SQKLKDSYAK GMRARKVVKM VKRSRVSNSR SKRKHAEMEA AADSDEAQGK  480
KAYYRGLSYT RQRTSRGLPA KRKRMADGAP SSSPELHVNT SDLMELGFDC AEGEPPAAAA  540
KLRSDKHNGK GEHVGGIDQA RNAFVESACT AKAASVATSP TAKGSAKLSK KSNEPHVKLT  600
IKSFTVPELS VDLPESATVS SLKRAVMDAA MNLLGGGLRV RVLLQGKKVP DEGATLAQVG  660
ISRSVKPDSL GFMLEPSPLP TSPTSTSEDP LLVLSRAAGQ PSPRFNGFGS PGMPSAAELG  720
SRCPQKTRSN KGTGGPVDGE AYTAPVSGDH NEAKRSGMTF QGPQEDALKG CPVSKPKSGL  780
NERMSLSPHS TRVAAAGALA AIRAQADASR RSAKNESDSA TPASHTLAHE TMVPGSGAII  840
LHPGMNVGEN MQGLALVPVR QKSHSMDVGK RRVRRPFSVS EVEALVHAVE KLGTGRWRDV  900
KLRAFDQAKH RTYVDLKDKW KTLVHTARIA PHQRRGEPVP QELLERVTHA HTYWTAQAAK  960
QQAELDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-488589641107Telomere binding protein TBP1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402291.10.0uncharacterized protein LOC112295236 isoform X1
RefseqXP_024402292.10.0uncharacterized protein LOC112295236 isoform X1
TrEMBLA0A2R6X1880.0A0A2R6X188_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.19e-49TRF-like 2