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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0043s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | Trihelix | ||||||||
Protein Properties | Length: 554aa MW: 59990.1 Da PI: 4.3623 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 62.6 | 9.2e-20 | 352 | 437 | 1 | 81 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rWt++e+ +L++++r+++e++r+++ ++ +W+++s++++++g+ r + qC+++w+nl+ ++kki+++ k s+++s +++ Mapoly0043s0010.1.p 352 RWTREETAVLLAGKRKRDEEIRSQQsgskfalSATERWDSISNHCKAHGVDRDAHQCRKRWSNLAADFKKIRTWHKM--SGVESYWSM 437 8*********************876677788899****************************************997..677777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.98E-5 | 350 | 418 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 9.7E-12 | 351 | 435 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-5 | 351 | 416 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 1.35E-15 | 351 | 423 | No hit | No description |
PROSITE profile | PS50090 | 7.608 | 352 | 416 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MEESEGVVED GIQRPTTTTT TTTTTTTTTS LGDGECDESS VVQEPKKKKQ KKNGSFRAST 60 TKKRRCSDGV EGFAGGLAGG VGSILKEHDE DEEDEDDDDD DASDEPEQVQ FYIAVDGDGD 120 GDVDADAEHD GCWNGSEGAA GGGGGAGAAK DLRIEIPHSV PTSEVVETTT TTTTENEDDE 180 DDEDDEDGEG DVIPEFDPDH KGHSLFTEEL RAAVEEGSAL QLPPMMAVMD SHFPSDEEQL 240 QQQLLLMDGS KDAVHVNGGA LQGQVPLPLP PLATVTPSTN TTYEGLNEHL DVIAFKIYSA 300 LQQANSHPPA VSSQAGEGDG HYQQLVDQEQ GGDKNHAAGG IDEGERTPRH PRWTREETAV 360 LLAGKRKRDE EIRSQQSGSK FALSATERWD SISNHCKAHG VDRDAHQCRK RWSNLAADFK 420 KIRTWHKMSG VESYWSMRGD SRRKNKLPGS FDPEVYADME ATCDSNPHRK RKLVPMAGTA 480 EDVDDHQHDP LASVLESSGR AMQAALARNI QAQIEAHNQN SELDRNQRKE QGDNLVGVLG 540 LLADSLAKIA AKM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 64 | KKKQKKNGSFRASTTKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6X0V6 | 0.0 | A0A2R6X0V6_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1747 | 13 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 4e-33 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0043s0010.1.p |