PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0039s0059.8.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 695aa    MW: 74664.5 Da    PI: 7.1979
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0039s0059.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.3e-16471517455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k+Lq
  Mapoly0039s0059.8.p 471 VHNLSERRRRDRINEKMKALQELIPNS-----NKTDKASMLDEAIEYLKMLQ 517
                          6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-20465530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.495467516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.73E-14470512No hitNo description
PfamPF000101.2E-13471517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-19471526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-18473522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MQNQSGKGNK AMWQQMNFQN GWSSVPESED AVTPVKPISS SSPGKEPVLV NEPAVDTHHS  60
SALNMQEDEM VCWLQYPLDE HLERDYCSEF FGELPNSNIS NMQLMKDSFA GQNQVAGRNN  120
RNPGPVNVGS NSRMSSADAA MAMGAGRAAG LLPQTGVEVF TKVRTTLQPY GGKWSPNQNN  180
AGKTLGAMTS TLAPSPSRSP PMSGNLSTPM LPPKSQGLSF QPPRTSGPMN FSHFSRPAAV  240
MKANLQCLGM SHVAPPHGSG TNVRLKSQPY SGKPPVDAST STGSSIAEST TTRQRSGAFR  300
KDTECQVEGS EAQQSLGTES SWPSMQNSLS GKDTDAVNSS VDGVDCDSKP GIADVDNCRN  360
SSITGSGGLG TEKHQSQGAE VQEAPEPTIT SSSGGSGNSA DRGKEAASSG KRRTREGEES  420
ECQSEVSNLL QPQGSQVGAV AHRQDGEDEM AQQKKPQQRG STTKRSRAAE VHNLSERRRR  480
DRINEKMKAL QELIPNSNKT DKASMLDEAI EYLKMLQLQL QQMMSMRSGM SIPSMVMPAG  540
MQHLQIPQLP QMGPMPPMGM GMGMGMGMGP MGMGMSMMDM GGGAPGRPMI PLPSHSGPSH  600
SHNVSATSPA VSMVDTHDHR LQNPSVMESL NVFMAQHRQM QMAPQPMSMD AFSAFMIHQH  660
QQQHQQQHQQ HQLQHQHQHS LHHLPSSMGG GAPQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1475480ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0932650.0LC093265.1 Marchantia polymorpha MpPIF gene for phytochrome interacting factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361326.11e-166uncharacterized protein LOC112275291 isoform X2
RefseqXP_024361334.11e-166uncharacterized protein LOC112275291 isoform X2
RefseqXP_024361343.11e-166uncharacterized protein LOC112275291 isoform X2
RefseqXP_024361352.11e-166uncharacterized protein LOC112275291 isoform X2
TrEMBLA0A2R6X3A70.0A0A2R6X3A7_MARPO; Uncharacterized protein
STRINGPP1S84_22V6.11e-165(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-26phytochrome interacting factor 3