PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0039s0059.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | bHLH | ||||||||
Protein Properties | Length: 743aa MW: 79979.3 Da PI: 6.6784 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.5 | 3.6e-16 | 519 | 565 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k+Lq Mapoly0039s0059.3.p 519 VHNLSERRRRDRINEKMKALQELIPNS-----NKTDKASMLDEAIEYLKMLQ 565 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-20 | 513 | 578 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.495 | 515 | 564 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.17E-14 | 518 | 560 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.8E-19 | 519 | 574 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-13 | 519 | 565 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-18 | 521 | 570 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 743 aa Download sequence Send to blast |
MSHLVPDWDG NGGDLEAVLP TSDFSLPVKG KWDSLPHKRS HLSGLAFVPT HDAGETEWAE 60 ESHIVAMQNQ SGKGNKAMWQ QMNFQNGWSS VPESEDAVTP VKPISSSSPG KEPVLVNEPA 120 VDTHHSSALN MQEDEMVCWL QYPLDEHLER DYCSEFFGEL PNSNISNMQL MKDSFAGQNQ 180 VAGRNNRNPG PVNVGSNSRM SSADAAMAMG AGRAAGLLPQ TGVEVFTKVR TTLQPYGGKW 240 SPNQNNAGKT LGAMTSTLAP SPSRSPPMSG NLSTPMLPPK SQGLSFQPPR TSGPMNFSHF 300 SRPAAVMKAN LQCLGMSHVA PPHGSGTNVR LKSQPYSGKP PVDASTSTGS SIAESTTTRQ 360 RSGAFRKDTE CQVEGSEAQQ SLGTESSWPS MQNSLSGKDT DAVNSSVDGV DCDSKPGIAD 420 VDNCRNSSIT GSGGLGTEKH QSQGAEVQEA PEPTITSSSG GSGNSADRGK EAASSGKRRT 480 REGEESECQS EQDGEDEMAQ QKKPQQRGST TKRSRAAEVH NLSERRRRDR INEKMKALQE 540 LIPNSNKTDK ASMLDEAIEY LKMLQLQLQQ MMSMRSGMSI PSMVMPAGMQ HLQIPQLPQM 600 GPMPPMGMGM GMGMGMGPMG MGMSMMDMGG GAPGRPMIPL PSHSGPSHSH NVSATSPAVS 660 MVDTHDHRLQ NPSVMESLNV FMAQHRQMQM APQPMSMDAF SAFMIHQHQQ QHQQQHQQHQ 720 LQHQHQHSLH HLPSSMGGGA PQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 523 | 528 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LC093265 | 0.0 | LC093265.1 Marchantia polymorpha MpPIF gene for phytochrome interacting factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361305.1 | 0.0 | uncharacterized protein LOC112275291 isoform X1 | ||||
Refseq | XP_024361311.1 | 0.0 | uncharacterized protein LOC112275291 isoform X1 | ||||
Refseq | XP_024361319.1 | 0.0 | uncharacterized protein LOC112275291 isoform X1 | ||||
TrEMBL | A0A2R6X394 | 0.0 | A0A2R6X394_MARPO; Uncharacterized protein | ||||
STRING | PP1S84_22V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 2e-26 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0039s0059.3.p |