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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0039s0059.12.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | bHLH | ||||||||
Protein Properties | Length: 760aa MW: 81694.3 Da PI: 6.7589 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.5 | 3.7e-16 | 537 | 583 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k+Lq Mapoly0039s0059.12.p 537 VHNLSERRRRDRINEKMKALQELIPNS-----NKTDKASMLDEAIEYLKMLQ 583 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.93E-20 | 531 | 592 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.495 | 533 | 582 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.76E-18 | 536 | 587 | No hit | No description |
Pfam | PF00010 | 1.3E-13 | 537 | 583 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-19 | 537 | 592 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-18 | 539 | 588 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 760 aa Download sequence Send to blast |
MSHLVPDWDG NGGDLEAVLP TSDFSLPVKG KWDSLPHKRS HLSGLAFVPT HDAGETEWAE 60 ESHIVAMQNQ SGKGNKAMWQ QMNFQNGWSS VPESEDAVTP VKPISSSSPG KEPVLVNEPA 120 VDTHHSSALN MQEDEMVCWL QYPLDEHLER DYCSEFFGEL PNSNISNMQL MKDSFAGQNQ 180 VAGRNNRNPG PVNVGSNSRM SSADAAMAMG AGRAAGLLPQ TGVEVFTKVR TTLQPYGGKW 240 SPNQNNAGKT LGAMTSTLAP SPSRSPPMSG NLSTPMLPPK SQGLSFQPPR TSGPMNFSHF 300 SRPAAVMKAN LQCLGMSHVA PPHGSGTNVR LKSQPYSGKP PVDASTSTGS SIAESTTTRQ 360 RSGAFRKDTE CQVEGSEAQQ SLGTESSWPS MQNSLSGKDT DAVNSSVDGV DCDSKPGIAD 420 VDNCRNSSIT GSGGLGTEKH QSQGAEVQEA PEPTITSSSG GSGNSADRGK EAASSGKRRT 480 REGEESECQS EVSNLLQPQG SQVGAVAHRQ DGEDEMAQQK KPQQRGSTTK RSRAAEVHNL 540 SERRRRDRIN EKMKALQELI PNSNKTDKAS MLDEAIEYLK MLQLQLQMMS MRSGMSIPSM 600 VMPAGMQHLQ IPQLPQMGPM PPMGMGMGMG MGMGPMGMGM SMMDMGGGAP GRPMIPLPSH 660 SGPSHSHNVS ATSPAVSMVD THDHRLQNPS VMESLNVFMA QHRQMQMAPQ PMSMDAFSAF 720 MIHQHQQQHQ QQHQQHQLQH QHQHSLHHLP SSMGGGAPQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 541 | 546 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LC093265 | 0.0 | LC093265.1 Marchantia polymorpha MpPIF gene for phytochrome interacting factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361305.1 | 1e-180 | uncharacterized protein LOC112275291 isoform X1 | ||||
Refseq | XP_024361311.1 | 1e-180 | uncharacterized protein LOC112275291 isoform X1 | ||||
Refseq | XP_024361319.1 | 1e-180 | uncharacterized protein LOC112275291 isoform X1 | ||||
TrEMBL | A0A176VUL8 | 0.0 | A0A176VUL8_MARPO; Uncharacterized protein | ||||
STRING | PP1S84_22V6.1 | 1e-179 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 3e-27 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0039s0059.12.p |