PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0038s0096.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family CPP
Protein Properties Length: 595aa    MW: 63415.9 Da    PI: 8.5211
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0038s0096.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR38.62.1e-12105144141
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          k++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ +
  Mapoly0038s0096.1.p 105 KKCKQCNCKNSRCLKLYCECFASGTYCDG-CNCVNCCNNVD 144
                          589**************************.********986 PP
2TCR51.42.2e-16191230140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Mapoly0038s0096.1.p 191 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNYE 230
                          589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.5E-13105145IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.896106231IPR005172CRC domain
PfamPF036381.4E-8108142IPR005172CRC domain
SMARTSM011142.5E-20191232IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.2E-13194229IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MKTVGATSPM DSSHPSASLS LAVVPAGSMA SSEQLTRKPV RQLDFTSMYG NAAATSSETS  60
LRSGQSNLYS TRPPSPVNSP ARKHGSPRAG HRPRAVFEPK DGTPKKCKQC NCKNSRCLKL  120
YCECFASGTY CDGCNCVNCC NNVDNESVRQ EAVETILERN PNAFRPKIAS SPSALLRDSR  180
EDNGEHPVAG KHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCIDCKNYE GSEERRALFH  240
GDHNVGINYS HMTSNGSVAA GPVATSSGTG GFTPSPMKRR RTHDLVFVGQ QGLKEQAPPR  300
RVPQAVVLQP CTAKMATTTI NPAAPILVPI ARGNNVLTPT MQIIPRSLLA GVIQQDAVHE  360
LCKLLVIVEN ETHKRLLGSL PESGTTQTGD NGASKPSIEI PSVATKEEEK TQLENEAGTE  420
EKASTSTGEI AIGEPNSGAE DGDMENGRKK RAMSPGTLAL MCDEQDTLFT APPSPSGGLF  480
SAGPYPSLIA ERERVILSEF RDCLRSIVSV GKRRVSSFEK DTLRSEMIQN LKRNQVLGDA  540
IRVLRPVPSP AHPVAQAVHA TGLTPIPLSA KTKITGSTSL TGVSNSGAVP AAQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-2910824012132Protein lin-54 homolog
5fd3_B5e-2910824012132Protein lin-54 homolog
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277282KRRRTH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361559.11e-149protein tesmin/TSO1-like CXC 5
TrEMBLA0A2R6X3T10.0A0A2R6X3T1_MARPO; Uncharacterized protein
STRINGPP1S10_254V6.21e-149(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-104Tesmin/TSO1-like CXC domain-containing protein