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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Mapoly0034s0053.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family |
bHLH |
Protein Properties |
Length: 418aa MW: 46125.3 Da PI: 7.0593 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Mapoly0034s0053.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 38.7 | 1.8e-12 | 238 | 285 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq
Mapoly0034s0053.1.p 238 QDHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 285
5699************************.....9******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 418 aa
Download sequence Send
to blast |
MEFAPSSTSA MQWLSEMGLE DPSLVRHLDS LFPPTSESLV NVVGHQNGHN LSFPSLMPGF 60 KTGNDVKIPS AVPPHNLSSY SSPLDSLCNL ERPMKMLRSN AWEGNISQQG QRSSTVPIYS 120 GKPQHRMVQF LQPEKIGNHR TEGFTSLSKI PDETLESVAS TTTSIPCRNG LRIQENCNDV 180 HSSIETESNS CGRESPNSLG ESMPGKRKPD MDYVDVKPDR VNAVQAPFTT VKGSGHTQDH 240 IMAERKRREK LSQRFIALSA IVPGLKKMDK ASVLGDAIKY VKQLQDRVKT LEESTPKKGL 300 RTVYTVKKQS RNASDEEDTS ENTTVTTVED EEQAAEIEAR MIEKNVLIKL HCEKKKGVLV 360 KSLAELEKLR LVVVSANILS FSATALDLTF NAKVEEGSEL TADDIVNALQ KLFKTFT*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 1e-14 | 239 | 288 | 8 | 57 | Transcription factor MYC2 |
5gnj_B | 1e-14 | 239 | 288 | 8 | 57 | Transcription factor MYC2 |
5gnj_E | 1e-14 | 239 | 288 | 8 | 57 | Transcription factor MYC2 |
5gnj_F | 1e-14 | 239 | 288 | 8 | 57 | Transcription factor MYC2 |
5gnj_G | 1e-14 | 239 | 288 | 8 | 57 | Transcription factor MYC2 |
5gnj_I | 1e-14 | 239 | 288 | 8 | 57 | Transcription factor MYC2 |
5gnj_M | 1e-14 | 239 | 288 | 8 | 57 | Transcription factor MYC2 |
5gnj_N | 1e-14 | 239 | 288 | 8 | 57 | Transcription factor MYC2 |
Nucleic Localization
Signal ? help
Back to Top |
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No. |
Start |
End |
Sequence |
1 | 243 | 248 | ERKRRE |
2 | 244 | 249 | RKRREK |