PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0034s0053.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 418aa    MW: 46125.3 Da    PI: 7.0593
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0034s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12238285355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Mapoly0034s0053.1.p 238 QDHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 285
                          5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.281235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-17238296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16239294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-10239285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-12240289No hitNo description
SMARTSM003538.3E-15241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEFAPSSTSA MQWLSEMGLE DPSLVRHLDS LFPPTSESLV NVVGHQNGHN LSFPSLMPGF  60
KTGNDVKIPS AVPPHNLSSY SSPLDSLCNL ERPMKMLRSN AWEGNISQQG QRSSTVPIYS  120
GKPQHRMVQF LQPEKIGNHR TEGFTSLSKI PDETLESVAS TTTSIPCRNG LRIQENCNDV  180
HSSIETESNS CGRESPNSLG ESMPGKRKPD MDYVDVKPDR VNAVQAPFTT VKGSGHTQDH  240
IMAERKRREK LSQRFIALSA IVPGLKKMDK ASVLGDAIKY VKQLQDRVKT LEESTPKKGL  300
RTVYTVKKQS RNASDEEDTS ENTTVTTVED EEQAAEIEAR MIEKNVLIKL HCEKKKGVLV  360
KSLAELEKLR LVVVSANILS FSATALDLTF NAKVEEGSEL TADDIVNALQ KLFKTFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14239288857Transcription factor MYC2
5gnj_B1e-14239288857Transcription factor MYC2
5gnj_E1e-14239288857Transcription factor MYC2
5gnj_F1e-14239288857Transcription factor MYC2
5gnj_G1e-14239288857Transcription factor MYC2
5gnj_I1e-14239288857Transcription factor MYC2
5gnj_M1e-14239288857Transcription factor MYC2
5gnj_N1e-14239288857Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243248ERKRRE
2244249RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176VHM20.0A0A176VHM2_MARPO; Uncharacterized protein
TrEMBLA0A2R6X5U90.0A0A2R6X5U9_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-44bHLH family protein