PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0031s0161.3.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 718aa    MW: 78366.2 Da    PI: 6.6966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0031s0161.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.4e-16465511455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +ErrRR+++N++f  Lr l+P       +K++Ka+iL  A+eY+k+Lq
  Mapoly0031s0161.3.p 465 SHVLAERRRREKLNDRFMSLRALVPFV-----TKMDKASILGDAIEYVKQLQ 511
                          7999**********************8.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.7E-5320204IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.473461510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-19461525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.45E-17464515No hitNo description
PfamPF000101.8E-13465511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-19465524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-19467516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MAGAGKRNSS TLIEVPKATL RGQLQAAVQS IKWTYTAFWQ QSKQKEVLVW GDGYYNGAIK  60
TRKTVQAAEL SQEELGMQRT RQLRDLYETL STAGDGNQST TRRPSAALTP EDLTETEWFY  120
LLCMSCSFSP ENGLPGKALA QGRHLWLTET NEASPEVFTR SLLAKTARIQ TVLCIPLCKG  180
VVEFGTTELV REDPALVQHI KTFFAEQFKP VGSEQSSSGP QHQGDTLLQQ QQQQQPGRSG  240
ANVDQHGASA AWLSTSSPWA SVNVSHQDSM VTFSHEAARD SAHGHGHGLH DDAVAMLVDD  300
QKSMGASAKS WDLLSDHIDG LPGSDISLDP YVGSGTNSSS DLMLLSARHP SSQPLQHLRR  360
FGSQRAAAHS LDHAEPDPLT RYDRQRQQPL GSTSAFVDWR MTAGSAPKAP LPGNQQWMLK  420
NALFHITHLY SAPRSDEATL VSADNRSRSG GPRKPAGAQE DLNVSHVLAE RRRREKLNDR  480
FMSLRALVPF VTKMDKASIL GDAIEYVKQL QKRIQELELR DKQAESSHLP RSHADDLSKS  540
QLGDSTPKTS PSETFNSSHF EIVSNGNHMT GIETNVNVSF DGASNSDPKV PSGDNEMKSS  600
PSLASDREDP GFCNSDGESN ATQAKRLDGV KANVKVTADD DVSLELNCPW RKTLLVDVLR  660
TLNDLQLDVF VVQASTSDGT LATVFKGKMR ESTHSLTATK TKLQTALEET AAGMGSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-191920047227Transcription factor MYC3
4ywc_A1e-191920047227Transcription factor MYC3
4ywc_B1e-191920047227Transcription factor MYC3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1469474ERRRRE
2470475RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6X7X00.0A0A2R6X7X0_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.15e-82bHLH family protein