PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0031s0161.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | bHLH | ||||||||
Protein Properties | Length: 718aa MW: 78366.2 Da PI: 6.6966 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50 | 5.4e-16 | 465 | 511 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr l+P +K++Ka+iL A+eY+k+Lq Mapoly0031s0161.1.p 465 SHVLAERRRREKLNDRFMSLRALVPFV-----TKMDKASILGDAIEYVKQLQ 511 7999**********************8.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 6.7E-53 | 20 | 204 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.473 | 461 | 510 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-19 | 461 | 525 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.45E-17 | 464 | 515 | No hit | No description |
Pfam | PF00010 | 1.8E-13 | 465 | 511 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-19 | 465 | 524 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-19 | 467 | 516 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 718 aa Download sequence Send to blast |
MAGAGKRNSS TLIEVPKATL RGQLQAAVQS IKWTYTAFWQ QSKQKEVLVW GDGYYNGAIK 60 TRKTVQAAEL SQEELGMQRT RQLRDLYETL STAGDGNQST TRRPSAALTP EDLTETEWFY 120 LLCMSCSFSP ENGLPGKALA QGRHLWLTET NEASPEVFTR SLLAKTARIQ TVLCIPLCKG 180 VVEFGTTELV REDPALVQHI KTFFAEQFKP VGSEQSSSGP QHQGDTLLQQ QQQQQPGRSG 240 ANVDQHGASA AWLSTSSPWA SVNVSHQDSM VTFSHEAARD SAHGHGHGLH DDAVAMLVDD 300 QKSMGASAKS WDLLSDHIDG LPGSDISLDP YVGSGTNSSS DLMLLSARHP SSQPLQHLRR 360 FGSQRAAAHS LDHAEPDPLT RYDRQRQQPL GSTSAFVDWR MTAGSAPKAP LPGNQQWMLK 420 NALFHITHLY SAPRSDEATL VSADNRSRSG GPRKPAGAQE DLNVSHVLAE RRRREKLNDR 480 FMSLRALVPF VTKMDKASIL GDAIEYVKQL QKRIQELELR DKQAESSHLP RSHADDLSKS 540 QLGDSTPKTS PSETFNSSHF EIVSNGNHMT GIETNVNVSF DGASNSDPKV PSGDNEMKSS 600 PSLASDREDP GFCNSDGESN ATQAKRLDGV KANVKVTADD DVSLELNCPW RKTLLVDVLR 660 TLNDLQLDVF VVQASTSDGT LATVFKGKMR ESTHSLTATK TKLQTALEET AAGMGSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 1e-19 | 19 | 200 | 47 | 227 | Transcription factor MYC3 |
4ywc_A | 1e-19 | 19 | 200 | 47 | 227 | Transcription factor MYC3 |
4ywc_B | 1e-19 | 19 | 200 | 47 | 227 | Transcription factor MYC3 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 469 | 474 | ERRRRE |
2 | 470 | 475 | RRRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6X7X0 | 0.0 | A0A2R6X7X0_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2447 | 14 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 5e-82 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0031s0161.1.p |