PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0031s0076.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | bHLH | ||||||||
Protein Properties | Length: 650aa MW: 72549 Da PI: 6.1904 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.8 | 1.6e-12 | 460 | 505 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N+++++Lr+l+P++ +K + a+i+ A++ I++L Mapoly0031s0076.1.p 460 HHFATERQRREHLNEKYQTLRSLVPNP-----TKADRASIVSDAINRIHDL 505 699************************.....9***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.54E-14 | 455 | 521 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.51E-13 | 455 | 510 | No hit | No description |
PROSITE profile | PS50888 | 15.421 | 456 | 505 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.8E-12 | 460 | 518 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.0E-10 | 461 | 505 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-11 | 462 | 511 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 650 aa Download sequence Send to blast |
MERIEAGVEM SSFNFHGGDF CQSEMGAYAD QEDQDIRAEM QAITDPGLNN VLLGLSDALD 60 TIPRSRYVGL TLGDLPLTNM NGSGSENFNA NRAMSDQQNM ANHDHPPDGL SFPVDASHRQ 120 GENDNHLAMQ EIRMIHQSEL ENEQQQEREQ QHHQHHQHHQ LMTENGPTDA FHEQSSETKN 180 CPGYSYDQKS GGHGFMTAWE ESVKYMEDLR QLQELQAQQQ PRAQPIANRV QPNNDIFSLE 240 NLGGLSAGIQ AFNSFSELEK ISEGHDLKDK LPAEVFNLLQ QPSHSISPSC STGLAFASSS 300 GSVYPSVSNF KRPTGPVNSC HVHVPMPNPH GYQLMDRGTN SSLFGGNGIQ APAVAYPGPF 360 TKLLNYNNVP GGSSRNYSKI FNYNSPAASG PGFFPTDLPP TKSGSNVDLL QLEYGHNEEL 420 QDVFGAAQMT APSHFLPEIP RRTKSASGRL TNEAEQKPLH HFATERQRRE HLNEKYQTLR 480 SLVPNPTKAD RASIVSDAIN RIHDLKKEEE GLMDEKKNRQ LRRQLRLEMR ANGKRQRAEE 540 SETAVKEDGE SLCLKALWSK KVSKHGTEIE VRIVCDEVDI HIRQKHMPRF LIRVITAVER 600 GLKLEILDGT GGVIHNCDVY RFKLKIQGDS CAFMGVIMAK LLEILDTVF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6X7M7 | 0.0 | A0A2R6X7M7_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2659 | 14 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06170.2 | 3e-20 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0031s0076.1.p |