PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0031s0041.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family GRAS
Protein Properties Length: 438aa    MW: 48762.4 Da    PI: 5.3119
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0031s0041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.97.2e-127614361373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..........sseelaa 80 
                          l+el++ecA+av+ +dl +   +L  l   + ++gd+ +R+ ayft+ALa r+a+  +      p  + se            s+ee++a
  Mapoly0031s0041.1.p  61 LRELIFECAQAVARHDLDRSLGILRYLASKVPEAGDAGERVGAYFTRALACRVAKRLEAAGGNGPEGDHSE-LlaslripdapSQEEIHA 149
                          6899***************************************************7666655444444443.246777788888888887 PP

                 GRAS  81 lkl.fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169
                            l ++ v+P+l+f+hltaNqaI+e++ege+ vH +Df+i+qG+QWp+L+qaLa+Rp+gpp+lR+Tg+gs    s + l++tg+rLa+fA
  Mapoly0031s0041.1.p 150 AYLaLNRVTPFLRFAHLTANQAIVEEMEGEDIVHLVDFEIMQGVQWPPLMQALAERPGGPPHLRLTGIGS----SPDILRQTGNRLADFA 235
                          7767******************************************************************....9*************** PP

                 GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                          ++l++pfef +lva  +e++++++++ ++gE++aVn+vlql r+l++  ++ +   ++L+++++l+Pkvv+++e+ea+hn+++Fl+rf e
  Mapoly0031s0041.1.p 236 RTLNLPFEFLPLVAGGIEQVSVDMFSKREGEVVAVNCVLQLNRFLEKGPDSLK---AFLEMIQTLRPKVVTLAEREANHNQPQFLDRFGE 322
                          *********************************************66666555...9********************************* PP

                 GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                          a ++y+ +fdslea+lp+ s +r++vE++++grei n+v+c ga+ +erhet+e+Wre +e+aGF+++p s++a +qaklllr ++s+gy
  Mapoly0031s0041.1.p 323 AYRHYAIIFDSLEATLPPRSPDRVTVEEVWFGREIANIVSCDGADWVERHETFEQWREIMESAGFHSLPPSTFALAQAKLLLRYYPSEGY 412
                          ****************************************************************************************** PP

                 GRAS 350 rveeesgslvlgWkdrpLvsvSaW 373
                          r+ e++++l+lgW+d+pL++vS+W
  Mapoly0031s0041.1.p 413 RLFENDDCLLLGWQDHPLFTVSSW 436
                          ************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.25535417IPR005202Transcription factor GRAS
PfamPF035142.5E-12461436IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MHSLSLLQTT LNRHHNPFVC SPFLLHEMLS SVDAKLSAAL EPASASAARG RDSRALDGSP  60
LRELIFECAQ AVARHDLDRS LGILRYLASK VPEAGDAGER VGAYFTRALA CRVAKRLEAA  120
GGNGPEGDHS ELLASLRIPD APSQEEIHAA YLALNRVTPF LRFAHLTANQ AIVEEMEGED  180
IVHLVDFEIM QGVQWPPLMQ ALAERPGGPP HLRLTGIGSS PDILRQTGNR LADFARTLNL  240
PFEFLPLVAG GIEQVSVDMF SKREGEVVAV NCVLQLNRFL EKGPDSLKAF LEMIQTLRPK  300
VVTLAEREAN HNQPQFLDRF GEAYRHYAII FDSLEATLPP RSPDRVTVEE VWFGREIANI  360
VSCDGADWVE RHETFEQWRE IMESAGFHSL PPSTFALAQA KLLLRYYPSE GYRLFENDDC  420
LLLGWQDHPL FTVSSWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-776743625378Protein SCARECROW
5b3h_A3e-776743624377Protein SCARECROW
5b3h_D3e-776743624377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024377672.11e-135scarecrow-like protein 18
RefseqXP_024377674.11e-135scarecrow-like protein 18
RefseqXP_024377675.11e-135scarecrow-like protein 18
RefseqXP_024377676.11e-135scarecrow-like protein 18
RefseqXP_024377677.11e-135scarecrow-like protein 18
TrEMBLA0A2R6X7I10.0A0A2R6X7I1_MARPO; Uncharacterized protein
STRINGPP1S240_118V6.11e-134(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP54911421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.17e-95GRAS family protein