PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0029s0130.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 472aa    MW: 51206.6 Da    PI: 6.557
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0029s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.6e-14227276155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h  +Er+RR+++N++f+ Lr ++Pka     +K +Ka+i+  ++ Y+ +L+
  Mapoly0029s0130.1.p 227 QRENHILAERQRREEMNEKFSALRAMIPKA-----TKKDKASIVGDTIAYVLELE 276
                          79****************************.....9***************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.018226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-12227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-16227289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.76E-14227280No hitNo description
Gene3DG3DSA:4.10.280.105.4E-17227288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.36E-6394463No hitNo description
Gene3DG3DSA:3.30.70.2601.4E-4394461No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAELAWLTSS PAAKVTLNAS SSFSNSNENL FDLLQGRLGS GAFGGAAIVD SSSFFRTSDQ  60
MTNVTVASNH TESTVSLMKA EDGNNHMHSP LWVAAGAAAV ATDGIYSSTG PAAAHVPSID  120
STQLSSYVKP HDPSPQLQAL RDFMAYGSNV NNHSMSTAVD NINLAPGHPM FLHLGEESPA  180
SLLIGMPHHS NPISTSPSKG PDMMAYRALC QAELFATERS PHRTQFQREN HILAERQRRE  240
EMNEKFSALR AMIPKATKKD KASIVGDTIA YVLELEKTLK QLKACKDSRK GFSFKLLKKK  300
SSSKVLEDND RSTSDTAPDT AAPEEMKPGP GCSNSTRFED IVLKECKERE EPTISSSDNI  360
SRDCSHNHHK PMEKDNLLDI DISSSSQVEV QNLGEQAVIK IVCARSRGLV LRIIQALEEC  420
KTEILQSNVT TVSQHSVHFI TVQINSGLSC SIEQMVQALL KASNPNQIAE T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6X9740.0A0A2R6X974_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1527134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.12e-14bHLH family protein