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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0029s0049.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | NF-YC | ||||||||
Protein Properties | Length: 219aa MW: 25039.8 Da PI: 6.4318 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 174.4 | 1.2e-54 | 54 | 158 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql+ fw++q +e+ ++fknh+lPlarikki+k+dedvkmi+aeaPvl++kace+fileltlrsw+h+eenkrrtl+++dia a+tr d Mapoly0029s0049.2.p 54 QLQLFWQQQiqeMEQINEFKNHQLPLARIKKIMKSDEDVKMIAAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRGD 143 89*****999899***************************************************************************** PP NF-YC 88 ifdflvdivprdelk 102 ifdflvdivprdelk Mapoly0029s0049.2.p 144 IFDFLVDIVPRDELK 158 ************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.56E-33 | 39 | 148 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 7.7E-37 | 68 | 140 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-21 | 76 | 139 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MASHPHHLQH PSSSPGMPHP QAVMQPPMHY PQGQPQLQGQ MQPQLHYQQI QKQQLQLFWQ 60 QQIQEMEQIN EFKNHQLPLA RIKKIMKSDE DVKMIAAEAP VLFAKACEMF ILELTLRSWI 120 HTEENKRRTL QRNDIAGAIT RGDIFDFLVD IVPRDELKEE DVPWSGVGVA GDPSVSYGGL 180 YYPPTLQQPL HHTMASPDMM VVQPSMPPNP QMMYQPPQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-53 | 62 | 154 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 132 | RRTLQRN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369382.1 | 2e-94 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q9SMP0 | 1e-64 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A2R6X8T0 | 1e-158 | A0A2R6X8T0_MARPO; Uncharacterized protein | ||||
STRING | PP1S315_9V6.3 | 6e-94 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 2e-56 | nuclear factor Y, subunit C4 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0029s0049.2.p |
Publications ? help Back to Top | |||
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