PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0025s0112.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 259aa    MW: 28553.2 Da    PI: 5.0557
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0025s0112.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.26.7e-21152231286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W+ +evl+Li++r +me+r+ +  ++++lW+e ++ +++ g++r  kqC+ekw++l  +yk + +g++++  ++    pyf +l+
  Mapoly0025s0112.1.p 152 WKSSEVLQLIKLRGDMETRFAKCTKRAGLWDELAEGLAALGVKRDGKQCREKWDKLTAEYKDVVDGKRDQ--NE---SPYFAELT 231
                          ********************************************************************94..44...49999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.805144208IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-4144208IPR009057Homeodomain-like
CDDcd122037.44E-22150214No hitNo description
PfamPF138375.4E-18150232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGSMDDFAPD LELEDDGLFR GRMSFRDLLE EADEKETKPP PRKKKRGSNN VQSLLEAVIA  60
RQQKFFSDLL ESIERKEQIR EQIRQEKEDK WRAEERAQLG VFNNAMLVLT QELVGGDRAS  120
NNSSVLPLAL TGSVVGSPEA GSVGPKRRSK NWKSSEVLQL IKLRGDMETR FAKCTKRAGL  180
WDELAEGLAA LGVKRDGKQC REKWDKLTAE YKDVVDGKRD QNESPYFAEL TEILGRAAAA  240
AAAAAAAVAA SAPDEEAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395857.19e-84trihelix transcription factor GTL1-like
TrEMBLA0A2R6XBD90.0A0A2R6XBD9_MARPO; Uncharacterized protein
STRINGPP1S224_109V6.13e-83(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP30821521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.19e-15Trihelix family protein