PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Mapoly0022s0128.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

Nin-like

Protein Properties

Length: 587aa MW: 64566.7 Da PI: 8.3559

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0022s0128.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.7	2.1e-27	445	494	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ei+l++ls+yF++pi++A+keL+v+lTvLK++CR++GI+RWPhRk+ksl Mapoly0022s0128.1.p 445 TEITLSELSNYFNMPITQASKELKVGLTVLKKRCREFGIPRWPHRKMKSL 494 68**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.724	431	514	IPR003035	RWP-RK domain
Pfam	PF02042	3.2E-22	447	494	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence Send to blast
MGSTGLRAST FPAASSSSRS LRAIAIFQHL QNLEIFKSVH LYTENGSVTA VQQEFLLSPG 60 SYSQISDPLP FYFSTPTGVE QFMGTLKRLT EFELWQCILE YSSNAPLATT VVPFLSVTRN 120 PQLRTLPTLA NDLILVEKAI EREKLLQCPP LRHPPSPRQE QEHLPVGTRG SPEDTRSWNP 180 IKWLPSTSAM SASTGQSAES NDTREDGLGD GSNLQLETLH EWGSDLELAS PRMFDTCLGS 240 SWSTSISSVP FTALMSAPSP TSSLMTNHKT ACSSWSSPNL GLNSLSGTFD YHLDSSSSQS 300 NFGHGRLALT YDLPSPGGNL SSCHSESVPM SMNGGLAYKA RNSAPLRKAV ERTRSHCSDE 360 SVCTPPILNE RQGSGYSLHS HSLPPQATKL RLSDCSHDLS PQETSSSRLT ETSLSRKDGV 420 TTRNMLEKVS GTSNHHQRGP TERMTEITLS ELSNYFNMPI TQASKELKVG LTVLKKRCRE 480 FGIPRWPHRK MKSLDSLIHN IQELAKGPEG KTSAPVMNAV KELEHQKKRM EERPGIELAE 540 RTKRLRQACF KASYKKRRQA QTLAQQESYE VSGAVPVDQC VSTLVS*

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence Send to blast

MGSTGLRAST FPAASSSSRS LRAIAIFQHL QNLEIFKSVH LYTENGSVTA VQQEFLLSPG  60
SYSQISDPLP FYFSTPTGVE QFMGTLKRLT EFELWQCILE YSSNAPLATT VVPFLSVTRN  120
PQLRTLPTLA NDLILVEKAI EREKLLQCPP LRHPPSPRQE QEHLPVGTRG SPEDTRSWNP  180
IKWLPSTSAM SASTGQSAES NDTREDGLGD GSNLQLETLH EWGSDLELAS PRMFDTCLGS  240
SWSTSISSVP FTALMSAPSP TSSLMTNHKT ACSSWSSPNL GLNSLSGTFD YHLDSSSSQS  300
NFGHGRLALT YDLPSPGGNL SSCHSESVPM SMNGGLAYKA RNSAPLRKAV ERTRSHCSDE  360
SVCTPPILNE RQGSGYSLHS HSLPPQATKL RLSDCSHDLS PQETSSSRLT ETSLSRKDGV  420
TTRNMLEKVS GTSNHHQRGP TERMTEITLS ELSNYFNMPI TQASKELKVG LTVLKKRCRE  480
FGIPRWPHRK MKSLDSLIHN IQELAKGPEG KTSAPVMNAV KELEHQKKRM EERPGIELAE  540
RTKRLRQACF KASYKKRRQA QTLAQQESYE VSGAVPVDQC VSTLVS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024393880.1	1e-168	uncharacterized protein LOC112291106 isoform X1
Refseq	XP_024393881.1	1e-168	uncharacterized protein LOC112291106 isoform X1
Refseq	XP_024393883.1	1e-168	uncharacterized protein LOC112291106 isoform X1
TrEMBL	A0A1B1FGW7	0.0	A0A1B1FGW7_MARPO; RKD
STRING	PP1S823_1V6.1	1e-158	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	7e-38	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Mapoly0022s0128.1.p