PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0018s0011.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family BBR-BPC
Protein Properties Length: 402aa    MW: 44598 Da    PI: 8.9932
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0018s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind244.47.7e-7511040120301
            GAGA_bind  20 lkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla......salpvgvqvls 103
                          + ++ +l+l+  iaerda+i ern a++ekkaa+ erd a+l+ d a++er+ alverd +++al  v+ ++       +      + ++
  Mapoly0018s0011.1.p 110 ICDQTALKLVKAIAERDAAILERNSAIAEKKAACVERDAALLRCDLAFSERDSALVERDAAVAALGAVRAGKFatftewT-----RHGSP 194
                          45667899*********************************************************999988665444332.....23333 PP

            GAGA_bind 104 gtksidslqq.lse.....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad... 184
                          ++ + ++lq  + +      +++  a+ + ++    ++  +e  ++++ + +++++qr  + k+k   k +k++  s +k  +e++    
  Mapoly0018s0011.1.p 195 NAVTSKTLQPpVVDsspfsVDFASAAACQWKSAVGRTNICSEYIQKQSMAGNVRESQRDLRSKRKIG-KDTKQGFLSSRKRPPEQKLliy 283
                          3333332222211123333334443333444444444444444444444444444444444444333.4444444444444444433333 PP

            GAGA_bind 185 erskaekksidlvlngvslDe.stlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273
                          +r + ++++ + ++ +   De     +P CsCtG+ + CYkWGnGGWqSaCCtt iS+yPLP+++k+r +R+agrKmS gaf+kl+ekL+
  Mapoly0018s0011.1.p 284 QRENLDQNERGSSVTEEVADEnICNSIPYCSCTGVNQPCYKWGNGGWQSACCTTMISMYPLPMNPKKRSSRLAGRKMSAGAFEKLVEKLT 373
                          556666666666555555555056689*************************************************************** PP

            GAGA_bind 274 aeGydlsnpvDLkdhWAkHGtnkfvtir 301
                           eG ++ +p+DLkdhWAkHGtn++vt+r
  Mapoly0018s0011.1.p 374 LEGVNVRCPIDLKDHWAKHGTNRYVTLR 401
                          **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062179.7E-6897401IPR010409GAGA-binding transcriptional activator
SMARTSM012264.9E-5997401IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MNVLCCLIEA VLRTITFSRT AIGFAPVSPF CTRERLFLAY QVLVLTGMDA ETLRERRFSQ  60
DSFWNEGLPD FVSKFAPVTQ GSSLARGPFL DDLSYSMDDE GRVGVRRRMI CDQTALKLVK  120
AIAERDAAIL ERNSAIAEKK AACVERDAAL LRCDLAFSER DSALVERDAA VAALGAVRAG  180
KFATFTEWTR HGSPNAVTSK TLQPPVVDSS PFSVDFASAA ACQWKSAVGR TNICSEYIQK  240
QSMAGNVRES QRDLRSKRKI GKDTKQGFLS SRKRPPEQKL LIYQRENLDQ NERGSSVTEE  300
VADENICNSI PYCSCTGVNQ PCYKWGNGGW QSACCTTMIS MYPLPMNPKK RSSRLAGRKM  360
SAGAFEKLVE KLTLEGVNVR CPIDLKDHWA KHGTNRYVTL R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391178.12e-67serine/threonine-protein kinase 24-like
TrEMBLA0A2R6XFD00.0A0A2R6XFD0_MARPO; Uncharacterized protein
STRINGPP1S56_2V6.16e-67(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28411331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.29e-55basic pentacysteine 4