PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0018s0001.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family HSF
Protein Properties Length: 513aa    MW: 56081.1 Da    PI: 4.6836
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0018s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.33.9e-36541452102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++ ++sws+++nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g++
  Mapoly0018s0001.1.p  54 FLNKTYDMVDDPATDAVVSWSSSSNSFIVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQR 134
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Mapoly0018s0001.1.p 135 HLLKNIHRRKP 145
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.3E-3649143IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-3950143IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-6350143IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.2E-3254143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-205477IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-2092104IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434093117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-20105117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MMTTSPSENS ILRWPEDSRE NLRLSGPATS SEKPLTSSGP QPMDGLQSSG PPPFLNKTYD  60
MVDDPATDAV VSWSSSSNSF IVWNPPEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD  120
RWEFANEGFL RGQRHLLKNI HRRKPVSHNQ PQPQPPSQSS TLGPCVEVGK FGLEGEIERL  180
KRDKNVLMLE LVRLRQQQQA TERELQVMGQ RLQVTEQRQQ QMMSFLAKAM QNPSFLAQLV  240
QQENSKRVAT DRKRRRLPKQ EGAGDSGSSG SASEGQIVKY QPNTSTDSAR AVLLHLFNNT  300
ESTTKMEANN SFEALFRDMG SGRAEELQEG SSLNRQSGVT LTEMHVPVTD GFPISSVDEL  360
PEETAACLTP SSPIIVAGTQ VGAQATANVL EGGNYLIQSS LTDVSAIESN GQSVALDCGI  420
SSSAGRISPA DDAGTGVDSA GVAPGINDVF WEQFLRGNPD SSETETEETE FGDNAAREGE  480
GEPMGSVQWW SNKPSVDQLA EQMEQLAPGS KP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-284814320129Heat shock factor protein 1
5d5v_B8e-284814320129Heat shock factor protein 1
5d5v_D8e-284814320129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251255RKRRR
2252256KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382543.11e-157heat stress transcription factor A-1b-like
TrEMBLA0A2R6XFA90.0A0A2R6XFA9_MARPO; Uncharacterized protein
STRINGPP1S249_84V6.11e-157(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.25e-96heat shock factor 3