PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0017s0009.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family GATA
Protein Properties Length: 396aa    MW: 43125.6 Da    PI: 6.7988
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0017s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.23.6e-16277313135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg  +  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Mapoly0017s0009.1.p 277 CVHCGIGErsTPMMRRGPSGPRTLCNACGLMWANKGV 313
                          ****866666************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009798.3E-12132167IPR010399Tify domain
PROSITE profilePS5132015.816132167IPR010399Tify domain
PfamPF062002.8E-14134166IPR010399Tify domain
PfamPF062032.5E-15201243IPR010402CCT domain
PROSITE profilePS5101713.225201243IPR010402CCT domain
SMARTSM004014.8E-13271324IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.091271319IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-12272325No hitNo description
CDDcd002022.36E-15276325No hitNo description
Gene3DG3DSA:3.30.50.109.6E-16276318IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.9E-14277313IPR000679Zinc finger, GATA-type
PROSITE patternPS003440277304IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MSDADHIAQA LHGHHGLHSH TLVGHPHGLS MSHSHAHHAQ AHELHHVQQP NQAESEVQAQ  60
VESQAHENAE LVHHGHVHGH HGHGHGLQHS EENGVGVDDQ DDDPGDEEGL DEAEMHSDGA  120
HPGDAPNQLA VRNQGTTQLT LSYQGEVYVF DTVPPEKVQA VLLLLGGREI PPGMSGVNVS  180
GHHHTNKGVS ELPARMNMPQ RLASLTRFRE KRKERCYDKK IRYTVRKEVA QRMQRKKGQF  240
ASSRTLGDEG GPVSNWDGSQ TPGQQPGQGG GQQEVTCVHC GIGERSTPMM RRGPSGPRTL  300
CNACGLMWAN KGVLRDLSKN PPLPGAPQQP HMLHQQQIIM RQQQQIEALQ HSLEHVPQSG  360
NETRMSNQQM DMEQQHSREL LPSAANGGTA VSAAG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880100.0AB288010.1 Marchantia polymorpha M88B7.1f mRNA for hypothetical protein, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395439.11e-149GATA transcription factor 28-like isoform X1
RefseqXP_024395440.11e-149GATA transcription factor 28-like isoform X1
RefseqXP_024395441.11e-149GATA transcription factor 28-like isoform X1
RefseqXP_024395442.11e-149GATA transcription factor 28-like isoform X1
RefseqXP_024395443.11e-149GATA transcription factor 28-like isoform X1
SwissprotQ8H1G02e-81GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A2R6XFK60.0A0A2R6XFK6_MARPO; Uncharacterized protein
STRINGPP1S69_103V6.21e-144(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-79ZIM-like 1