PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0015s0164.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family B3
Protein Properties Length: 519aa    MW: 58146.1 Da    PI: 10.7661
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0015s0164.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.42.2e-17133221198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k++++s+++   +l lp +f+ +h  k      ++lede+g +We  + + kk+    l++GW++F  +++L++gD vvF+l++ ++f
  Mapoly0015s0164.1.p 133 FVKAMLRSHTSGGFWLGLPSDFCITHFRKD---ELVILEDEDGLEWETIYLHHKKG----LSGGWRGFSIDHDLEDGDAVVFELVKPTRF 215
                          89************************6553...36***************666666....9**********************9987777 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            +v++ r
  Mapoly0015s0164.1.p 216 --KVHITR 221
                          ..777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-20124222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-22126221IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-24131221No hitNo description
PfamPF023622.0E-15133222IPR003340B3 DNA binding domain
SMARTSM010191.4E-23133223IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929133223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MATDFRRDLE PASGKLTYEE ARLKRIEDNK KRMEELGLKD QLSLFTKSPS KTNTPRKAIK  60
KNLQECAVEI RRSPRVTRKP SVNYYEKNRA EVEGTGCPRK RIGRVLKRGF ISPAARSEAS  120
VRASEIKTGH PSFVKAMLRS HTSGGFWLGL PSDFCITHFR KDELVILEDE DGLEWETIYL  180
HHKKGLSGGW RGFSIDHDLE DGDAVVFELV KPTRFKVHIT RAVGSKSLEC TPNVALRSKS  240
YRYALKENKE NEHVNSALHK VLKREQQETE DAENRVSKRR AKLGAKSLKR KLDLSEDSAC  300
KYSVGDEPLH KKVIIEVSDS DNESPGDAGL KERQKSSGRR ILRHRPPATK SVEKPVVPPL  360
NVKISKGETQ RNNKNGEEKN VHEPQRRKVT EAIQTPVVDK KKGVVLTKKV TEAIRTPVVD  420
KKKGVVLTKK VTEAIQPPFV DKKKGVVLTK KVRFAAVPKT SACATTKSSL KLPPGAKIKA  480
WGVCSIARNC NMSRKLPGTG TRKYSFFSPG KRPVAKAR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XGZ20.0A0A2R6XGZ2_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-45B3 family protein