PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0014s0195.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 955aa    MW: 107344 Da    PI: 4.9043
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0014s0195.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.5e-14853248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Mapoly0014s0195.1.p  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                         78*****************************.************986 PP
2Myb_DNA-binding32.91.5e-1060103248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Mapoly0014s0195.1.p  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPAQCLERYEKLL 103
                          68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
CDDcd001677.20E-121053No hitNo description
PfamPF139214.4E-131070No hitNo description
SuperFamilySSF466896.11E-2133108IPR009057Homeodomain-like
CDDcd116595.67E-3155106No hitNo description
Gene3DG3DSA:1.10.10.603.8E-1457104IPR009057Homeodomain-like
SMARTSM007172.5E-1258105IPR001005SANT/Myb domain
PROSITE profilePS5129416.52958107IPR017930Myb domain
PfamPF118318.1E-60408654IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 955 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPAQCLERYE KLLDAACAKD ENYEPADDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDVRHR RRKQKGIDYN AEIPFEKKPP PGFFEVSQEE RIVEEPQFPT  240
TIEEVEGKRR ADIEAQLRKQ DVARNKIAQR RDTPASVMQV NKLNDPEAVR KRSKLMLPAP  300
QISDRELEEI AKMGYASDLL TGEDDFREGT SATRALLANY NQTPAHPGMT PLRTPQRTPG  360
GKGDAIMMEA ENLARLRETQ TPLFGGENPE LHPSDFSGVN PKKKDIQTPN PIATPMRTPS  420
GGMGATPGMT PMKDSAMYGM TPKGTPIRDE LHINEGMETP FDNAKAEKMR QAELRRNLRA  480
GLGDLPAPKN EYQIVVPDLP PEEAEPVRDM EEDMSDLLAR QRADEAAKQA ALLRKRSKAL  540
QRDLPRPPLG GVELLRSSLQ STENAVTYLD EADELIRREM VELLEHDAVK YAVKDESSSK  600
DKKKGTKTGV NGRAQAPVPW IEDFEEDHLL EAAKLIEEEI DILRMAMGHE DATLDDYADA  660
RDACVEDMVY LPTRNSYGLA SVASSGDRLA SMQYELDNIR KLMEGETKRA VRLEQKLKVL  720
TQGYQTRAES LGRLIEASFK TADTLGTELK CFRALHRQEQ LAAPRRIEAL QDLVTQQVER  780
ERVLQLQYEN LLVEQDNLTR LIDDHDVATA KALEAKLATE DAATEERDAD SEIQIVEDLQ  840
QKAPAKEDAI QERRDSSFDE AEDMQGIEKE SVERSPLNAE KAMEEVSVER VVLPGTAVEM  900
LIEAGVDAVA SVDEVSAMKE GLVEVEEANV VRHNAEGFNE VETGTNSAGT VQIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027983798Cell division cycle 5-like protein
5xjc_L0.027983798Cell division cycle 5-like protein
5yzg_L0.027983798Cell division cycle 5-like protein
5z56_L0.027983798Cell division cycle 5-like protein
5z57_L0.027983798Cell division cycle 5-like protein
5z58_L0.027983798Cell division cycle 5-like protein
6ff4_L0.027983798Cell division cycle 5-like protein
6ff7_L0.027983798Cell division cycle 5-like protein
6icz_L0.027983798Cell division cycle 5-like protein
6id0_L0.027983798Cell division cycle 5-like protein
6id1_L0.027983798Cell division cycle 5-like protein
6qdv_O0.027983798Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185202KRRELKAAGIDVRHRRRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370979.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A2R6XHW30.0A0A2R6XHW3_MARPO; Uncharacterized protein
STRINGPP1S641_1V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP39481723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]