PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Mapoly0014s0193.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

MYB_related

Protein Properties

Length: 660aa MW: 66138.7 Da PI: 10.2778

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0014s0193.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.6	7.9e-10	213	257	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r+ WT+eEd+ l+ av++ G g+W+ I + Rt+ q+ rw Mapoly0014s0193.1.p 213 RKLWTQEEDQELIAAVEKCGEGNWTNILKGAFtHDRTAAQLSQRW 257 567**************************9999999999999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-15	207	260	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.257	208	265	IPR017930	Myb domain
SuperFamily	SSF46689	3.04E-13	210	262	IPR009057	Homeodomain-like
SMART	SM00717	8.2E-10	212	263	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-8	213	257	IPR001005	SANT/Myb domain
CDD	cd11660	1.37E-13	216	262	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence Send to blast
MGKKGTLCES EIGQILRRYS AVTVMGLIRE IARCESSKLD FNALVKKSST GISCAREYQA 60 LWRHIAYRAE LDDAYEEDAE LLEDDSDLEF ELEPAPSVSP EVAAEAANWV KADMQRFGIV 120 APKRKGDLLT KLKSRDADSA STVGNQAPAS SGLSASATDI SAKGAPAAAS APAWDAGTTS 180 PTGTTNQISS ATPESPSAAS TRIALGQSER KKRKLWTQEE DQELIAAVEK CGEGNWTNIL 240 KGAFTHDRTA AQLSQRWALI RKRREVQAAA AQKAIPGSSS GGAADAQQGA NQLATSTSGA 300 KVSQNGGTFV VSSATQLASP VTPGAAFSPL TPPVAITGPT PGPSTSAQPQ IQGLHVSGSS 360 SNSPGSIVVT SAPNGTLAPS GGSLDGVSYK TAPQVARPSG APTVRTGAVV TQRQGQAVGA 420 ARSTAGSSTA SAALSTEQIR GGVAKTVGSG VGAGRLIAPG AVVMSAAAAQ AASVGGSEMW 480 QASSLPPAAT QSSVPAKYGS RGNAGPSSGR VNMLMKQQIT GPDPGVQAAA VAAGARIAPA 540 SAAASLLKAA QSGNVVHIGP GGVPITKTGL QNQAGIGHGS NVGSRGSSGG AIVHYIRTGA 600 GAPPPSLPGM MRPSQQQKSQ PGKSPGVNQI SNSAASKQQS SPAPSSATSQ AVTPPSQSK*

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence Send to blast

MGKKGTLCES EIGQILRRYS AVTVMGLIRE IARCESSKLD FNALVKKSST GISCAREYQA  60
LWRHIAYRAE LDDAYEEDAE LLEDDSDLEF ELEPAPSVSP EVAAEAANWV KADMQRFGIV  120
APKRKGDLLT KLKSRDADSA STVGNQAPAS SGLSASATDI SAKGAPAAAS APAWDAGTTS  180
PTGTTNQISS ATPESPSAAS TRIALGQSER KKRKLWTQEE DQELIAAVEK CGEGNWTNIL  240
KGAFTHDRTA AQLSQRWALI RKRREVQAAA AQKAIPGSSS GGAADAQQGA NQLATSTSGA  300
KVSQNGGTFV VSSATQLASP VTPGAAFSPL TPPVAITGPT PGPSTSAQPQ IQGLHVSGSS  360
SNSPGSIVVT SAPNGTLAPS GGSLDGVSYK TAPQVARPSG APTVRTGAVV TQRQGQAVGA  420
ARSTAGSSTA SAALSTEQIR GGVAKTVGSG VGAGRLIAPG AVVMSAAAAQ AASVGGSEMW  480
QASSLPPAAT QSSVPAKYGS RGNAGPSSGR VNMLMKQQIT GPDPGVQAAA VAAGARIAPA  540
SAAASLLKAA QSGNVVHIGP GGVPITKTGL QNQAGIGHGS NVGSRGSSGG AIVHYIRTGA  600
GAPPPSLPGM MRPSQQQKSQ PGKSPGVNQI SNSAASKQQS SPAPSSATSQ AVTPPSQSK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6XHV7	0.0	A0A2R6XHV7_MARPO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5923	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	8e-21	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Mapoly0014s0193.1.p