PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0013s0172.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 486aa    MW: 53861.1 Da    PI: 8.6765
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0013s0172.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015189213123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          +kC+   C+k+F+++ ++k H +tH
  Mapoly0013s0172.1.p 189 FKCGfgSCNKTFKNPQTMKMHHKTH 213
                          89**********************9 PP
2zf-C2H214.97.4e-05247265220
                          EETTTTEEESSHHHHHHHH CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                          +Cp+C+k+F   ++L+rH 
  Mapoly0013s0172.1.p 247 RCPICKKTFVGLYELRRHF 265
                          7*****************6 PP
3zf-C2H211.10.0012276298123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C++Cgk F    +L+ H +++
  Mapoly0013s0172.1.p 276 FACKKCGKKFYIEVDLRDHEKLC 298
                          78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.44E-6185214No hitNo description
Gene3DG3DSA:3.30.160.601.3E-6186215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.198189218IPR007087Zinc finger, C2H2
SMARTSM003550.021189213IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280191213IPR007087Zinc finger, C2H2
SuperFamilySSF576678.25E-8246296No hitNo description
SMARTSM003550.12246269IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280248269IPR007087Zinc finger, C2H2
PROSITE profilePS501579.245276297IPR007087Zinc finger, C2H2
SMARTSM0035540276296IPR015880Zinc finger, C2H2-like
SMARTSM00355190302323IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MPNMAVSTTV LEAHASTRDS ALHKQNTPPL PPMPLSCASF QGMEREFGDY PLMPTVSPAL  60
LQLSGNRNLS PTLSHYKMPA SGFNSMNPVS TPVMHPNLVM TLKSIISPSP DMCDQATKVA  120
ETLKGVEGYG QQQQQQQQSS DMDSVLTSSL YSSGTPPSVL KQEVFPPGEV DDDEAAVVSV  180
DLIQNRRPFK CGFGSCNKTF KNPQTMKMHH KTHYSDDSSY RFGTNPHVLS TVPSAYKAGH  240
NKKIPSRCPI CKKTFVGLYE LRRHFGRKHS EGEKTFACKK CGKKFYIEVD LRDHEKLCGE  300
PIECKCGMKF AFKCNLVAHK KGHPECQDHP PSAEEDQQQL KQQQEGKGVV APSTPSESPR  360
STRDLYSMRH NPRSATRYRM GTVFPNPSPF HNPMHDLFFN QTKLDIMANE SSQTTLPELP  420
LMFSDNQLKD VAKVTPQQFS SQSSLGDSSL VPSKPYFQSK GASTIVNPLS SQSSPGSLYR  480
QNYLF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356411.13e-91zinc finger protein 850-like
TrEMBLA0A176WGI60.0A0A176WGI6_MARPO; Uncharacterized protein
STRINGPP1S303_40V6.11e-90(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1095648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-13indeterminate(ID)-domain 2