PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0011s0205.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family HSF
Protein Properties Length: 407aa    MW: 45839.7 Da    PI: 6.8713
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0011s0205.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35241162103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++e++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F+kg+k
  Mapoly0011s0205.1.p  24 FLTKTYQLVDDPATNEIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEYFRKGEK 104
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i+r+k++
  Mapoly0011s0205.1.p 105 HLLCEIHRRKTS 116
                          *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3716108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5920113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.46E-3421113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3124113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MTLLFDNNEG GFLSESHRSM PAPFLTKTYQ LVDDPATNEI VSWGEDDTTF VVWRPPEFAR  60
DLLPNYFKHN NFSSFVRQLN TYGFRKIVPD RWEFANEYFR KGEKHLLCEI HRRKTSSQAP  120
QGSSLQAARS LSPSSNSADE QAWSPLSSPL SSPRAVANQA TVLSVAEDND RLRRDNSMLI  180
SEIARLHRLY EDILVFLQDK MQVPSSDLSW LTKRLNCHPA MEPQIIQAVP ASRLGDSKSR  240
ADIMWEDKMV REREQDCIPP SQESTCTLQF VALQTPGLSS SLRDCTTPTA STLSFLDAKL  300
REMASTSGQP RVDDSRSGPK LFGVPLHGKR RMNAGGWDDL ELASKRVCSF SLEEIDPNRS  360
VGKDMNQRPL PAKSVKTELA LELRPSAVES APWLKFSATR DERVYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B1e-22201182110Heat shock factor protein 2
5d8l_B1e-22201182110Heat shock factor protein 2
5d8l_D1e-22201182110Heat shock factor protein 2
5d8l_F1e-22201182110Heat shock factor protein 2
5d8l_H1e-22201182110Heat shock factor protein 2
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024542019.11e-101heat stress transcription factor B-4b
TrEMBLA0A176VNB70.0A0A176VNB7_MARPO; Uncharacterized protein
TrEMBLA0A2R6XKB90.0A0A2R6XKB9_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-80heat shock transcription factor B4