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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0009s0166.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | LBD | ||||||||
Protein Properties | Length: 126aa MW: 13706.6 Da PI: 7.4103 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.8 | 1.2e-40 | 13 | 110 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+ rrkC+++Cv+apyfpa+qp kfanvh++FGasnv+k+l++lpe+ r da++sl++eAear++dPvyG+ g i+ q ++ +l Mapoly0009s0166.1.p 13 SCAACKFTRRKCTAECVFAPYFPADQPLKFANVHRIFGASNVTKILQDLPESSRADAVTSLAFEAEARMKDPVYGCSGAISLTQTRILEL 102 6***************************************************************************************** PP DUF260 91 kaelallk 98 +ae+++l Mapoly0009s0166.1.p 103 QAEIQELV 110 ***99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.878 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.9E-40 | 13 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MSHTSGASSS SSSCAACKFT RRKCTAECVF APYFPADQPL KFANVHRIFG ASNVTKILQD 60 LPESSRADAV TSLAFEAEAR MKDPVYGCSG AISLTQTRIL ELQAEIQELV DQVHHLEEKK 120 PMRLT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-44 | 9 | 106 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-44 | 9 | 106 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010528230.1 | 3e-47 | PREDICTED: LOB domain-containing protein 25 | ||||
Swissprot | Q8L8Q3 | 9e-47 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A2R6XLT5 | 9e-88 | A0A2R6XLT5_MARPO; Uncharacterized protein | ||||
STRING | XP_010528230.1 | 1e-46 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 3e-44 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0009s0166.1.p |
Publications ? help Back to Top | |||
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