PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0008s0029.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 804aa    MW: 86225.5 Da    PI: 7.2002
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0008s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-17196241147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ede+l ++v q+G+ +W++Ia++++ gR++k+c++rw++ 
  Mapoly0008s0029.1.p 196 RGHWRPAEDEKLRELVSQYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 241
                          899*****************************.***********996 PP
2Myb_DNA-binding54.52.7e-17248292147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r ++++eE+e+l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ +
  Mapoly0008s0029.1.p 248 RRPFSEEEEEKLLAAHRFHGNK-WAMIARLFP-GRTDNAVKNHWHVV 292
                          679*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.661191242IPR017930Myb domain
SMARTSM007177.7E-15195244IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-28195289IPR009057Homeodomain-like
PfamPF002491.4E-16196241IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-27197249IPR009057Homeodomain-like
CDDcd001672.24E-13199240No hitNo description
PROSITE profilePS5129426.154243297IPR017930Myb domain
SMARTSM007171.9E-15247295IPR001005SANT/Myb domain
PfamPF002499.1E-14248291IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-20250296IPR009057Homeodomain-like
CDDcd001675.17E-7258293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MCLSHSGGKG ASKRMRISYD LQTSAVAPSN AEALLYHSPY EFENDSRPTL SLAAGSVTYS  60
YDTVDGERNS NSGSILVENQ MCAGDRSDDV TAISFPGLGL GSEMIQSAWR VQSVESCSRG  120
YSNSAGGGGA GAAGGGGAGG GGADLNLMRD EEDEMGEQGM SLDDMKDSAT NEDGTENSVG  180
KLEMDLSSGQ SKLCPRGHWR PAEDEKLREL VSQYGPQNWN LIAEKLQGRS GKSCRLRWFN  240
QLDPRINRRP FSEEEEEKLL AAHRFHGNKW AMIARLFPGR TDNAVKNHWH VVMARKYRER  300
SRAFGRRSKS QLSRRGGKRG STGGTTTSSG LNASHHGPAD SLTAWIEKYS IAPSEVDSIS  360
PSSHYGGGSQ SLKSLTNGHY QSSSDLLREE DECEGPSGFS ARGRDRSMDP RDDSPRSNSS  420
KITIPRLSFA SSDKDDAPQQ QRNFIHSYAN SAKPPAAAAA AASASTLLHS SPRALVDSKP  480
IAHPFAGNVR QLGQQQTPSG GLLQSPRRGG AASSAVGGGG GGEMDNSSGS PPSSSANAEF  540
LNRAAEALAE SKGAFVGLKT SEQGGLFHSA MATPHWLIPS LPVATMAQPP PQQQQVPVAV  600
MEEIERSIAS RSLRNSCRSE LQRQQQQQQY HPPPHHHHQH QQQQQQHHHH QHHQQQQQQQ  660
QAPLSSSSSF VNENNPNLGR SLFLPNGVLS AQQQHHHHHP QEQQSGSSTN HHHHGGYWRR  720
EGIDGVVPAS GGGGAGAPPV LSTGLCENVA LCGAIQHLRE SLCKEKPSSA SSRASNDHIA  780
LQEAESEPAP PIQFIDFLGV GVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-321962967107B-MYB
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176WE500.0A0A176WE50_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.14e-65myb domain protein 117