PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0005s0077.6.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

GATA

Protein Properties

Length: 587aa MW: 66639.6 Da PI: 7.9652

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0005s0077.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	26.2	1.1e-08	58	89	1	32
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C+ Cg+ + +l Rrgp g++tLC++CG+++ + Mapoly0005s0077.6.p 58 CADCGSGEKKLTRRGPLGPRTLCSPCGVKWVS 89 9****************************966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	5.5E-4	52	103	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	4.1E-4	56	89	IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence Send to blast
MISVCSKVDD SFKNSMDRAE RRQRRLDQKN WGGGVYAGKK RDASKGHDES VDQRATKCAD 60 CGSGEKKLTR RGPLGPRTLC SPCGVKWVSE ATNMSHHSPS SAGRVPASEV SQKKARNAIR 120 NLQDTSSEGE SVEDIGQDRG ADMYIKDLER KLRDLKSEHQ NLQNALHVSD ASVTTFRKLN 180 DQRQHKIDEL ETLVESLTAK IKEISSPLSG SASGAEAECV RLRSEVRKLE DKLRTDVRNL 240 EDRNRQLVEN MELMSELLSK NFSAGKEILA QSLLINGDHN TRSRRSGVVT DQQQQTGHYQ 300 ESKKASNVVK NKYDVPPGFE VDADVDVDAD IGDNEPEYHV LRRERRRSPR KVLEDPVPCS 360 NGSRGTGGDR DRRDLGWNRD QDWERLYHGE SPDLVRERRR EEVRGNKKDA EVRLEKAGGG 420 KQYGSCSGED KSLRPLVTYD ALPLARQHVE QTFITWLNSK LRKPTEEEME YHKTQFSTNG 480 KTCYWSGIPG SELLAQYEEA CPLKQAPDKE ALELVLRTIL HVEACPMRPN DVLWCLVWQD 540 CMKIEHLPGY HDMDVARIKR EMRRPRSPVV GVEESDRSLR QRFTYC*

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence Send to blast

MISVCSKVDD SFKNSMDRAE RRQRRLDQKN WGGGVYAGKK RDASKGHDES VDQRATKCAD  60
CGSGEKKLTR RGPLGPRTLC SPCGVKWVSE ATNMSHHSPS SAGRVPASEV SQKKARNAIR  120
NLQDTSSEGE SVEDIGQDRG ADMYIKDLER KLRDLKSEHQ NLQNALHVSD ASVTTFRKLN  180
DQRQHKIDEL ETLVESLTAK IKEISSPLSG SASGAEAECV RLRSEVRKLE DKLRTDVRNL  240
EDRNRQLVEN MELMSELLSK NFSAGKEILA QSLLINGDHN TRSRRSGVVT DQQQQTGHYQ  300
ESKKASNVVK NKYDVPPGFE VDADVDVDAD IGDNEPEYHV LRRERRRSPR KVLEDPVPCS  360
NGSRGTGGDR DRRDLGWNRD QDWERLYHGE SPDLVRERRR EEVRGNKKDA EVRLEKAGGG  420
KQYGSCSGED KSLRPLVTYD ALPLARQHVE QTFITWLNSK LRKPTEEEME YHKTQFSTNG  480
KTCYWSGIPG SELLAQYEEA CPLKQAPDKE ALELVLRTIL HVEACPMRPN DVLWCLVWQD  540
CMKIEHLPGY HDMDVARIKR EMRRPRSPVV GVEESDRSLR QRFTYC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6XQQ1	0.0	A0A2R6XQQ1_MARPO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51600.2	2e-08	ZIM-LIKE 2

Link Out ? help Back to Top
Phytozome	Mapoly0005s0077.6.p