PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0005s0077.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | GATA | ||||||||
Protein Properties | Length: 565aa MW: 64420.2 Da PI: 7.9561 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 26.9 | 6.7e-09 | 58 | 89 | 1 | 32 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C+ Cg+ + +l Rrgp g++tLC++CG+++ + Mapoly0005s0077.4.p 58 CADCGSGEKKLTRRGPLGPRTLCSPCGVKWVS 89 9****************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.7E-4 | 52 | 104 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.7E-5 | 56 | 95 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MISVCSKVDD SFKNSMDRAE RRQRRLDQKN WGGGVYAGKK RDASKGHDES VDQRATKCAD 60 CGSGEKKLTR RGPLGPRTLC SPCGVKWVSE KKARNAIRNL QDTSSEGESV EDIGQDRGAD 120 MYIKDLERKL RDLKSEHQNL QNALHVSDAS VTTFRKLNDQ RQHKIDELET LVESLTAKIK 180 EISSPLSGSA SGAEAECVRL RSEVRKLEDK LRTDVRNLED RNRQLVENME LMSELLSKNF 240 SAGKEILAQS LLINGDHNTR SRRSGVVTDQ QQQTGHYQES KKASNVVKNK YDVPPGFEVD 300 ADVDVDADIG DNEPEYHVLR RERRRSPRKV LEDPVPCSNG SRGTGGDRDR RDLGWNRDQD 360 WERLYHGESP DLVRERRREE VRGNKKDAEV RLEKAGGGKQ YGSCSGEDKS LRPLVTYDAL 420 PLARQHVEQT FITWLNSKLR KPTEEEMEYH KTQFSTNGKT CYWSGIPGSE LLAQYEEACP 480 LKQAPDKEAL ELVLRTILHV EACPMRPNDV LWCLVWQDCM KIEHLPGYHD MDVARIKREM 540 RRPRSPVVGV EESDRSLRQR FTYC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6XQV8 | 0.0 | A0A2R6XQV8_MARPO; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 9e-08 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0005s0077.4.p |