PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0005s0077.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

GATA

Protein Properties

Length: 593aa MW: 67146 Da PI: 7.8231

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0005s0077.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	26.1	1.2e-08	64	95	1	32
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C+ Cg+ + +l Rrgp g++tLC++CG+++ + Mapoly0005s0077.1.p 64 CADCGSGEKKLTRRGPLGPRTLCSPCGVKWVS 95 9****************************966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	5.5E-4	58	109	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	4.1E-4	62	95	IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MAYASGAADV CSKVDDSFKN SMDRAERRQR RLDQKNWGGG VYAGKKRDAS KGHDESVDQR 60 ATKCADCGSG EKKLTRRGPL GPRTLCSPCG VKWVSEATNM SHHSPSSAGR VPASEVSQKK 120 ARNAIRNLQD TSSEGESVED IGQDRGADMY IKDLERKLRD LKSEHQNLQN ALHVSDASVT 180 TFRKLNDQRQ HKIDELETLV ESLTAKIKEI SSPLSGSASG AEAECVRLRS EVRKLEDKLR 240 TDVRNLEDRN RQLVENMELM SELLSKNFSA GKEILAQSLL INGDHNTRSR RSGVVTDQQQ 300 QTGHYQESKK ASNVVKNKYD VPPGFEVDAD VDVDADIGDN EPEYHVLRRE RRRSPRKVLE 360 DPVPCSNGSR GTGGDRDRRD LGWNRDQDWE RLYHGESPDL VRERRREEVR GNKKDAEVRL 420 EKAGGGKQYG SCSGEDKSLR PLVTYDALPL ARQHVEQTFI TWLNSKLRKP TEEEMEYHKT 480 QFSTNGKTCY WSGIPGSELL AQYEEACPLK QAPDKEALEL VLRTILHVEA CPMRPNDVLW 540 CLVWQDCMKI EHLPGYHDMD VARIKREMRR PRSPVVGVEE SDRSLRQRFT YC*

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MAYASGAADV CSKVDDSFKN SMDRAERRQR RLDQKNWGGG VYAGKKRDAS KGHDESVDQR  60
ATKCADCGSG EKKLTRRGPL GPRTLCSPCG VKWVSEATNM SHHSPSSAGR VPASEVSQKK  120
ARNAIRNLQD TSSEGESVED IGQDRGADMY IKDLERKLRD LKSEHQNLQN ALHVSDASVT  180
TFRKLNDQRQ HKIDELETLV ESLTAKIKEI SSPLSGSASG AEAECVRLRS EVRKLEDKLR  240
TDVRNLEDRN RQLVENMELM SELLSKNFSA GKEILAQSLL INGDHNTRSR RSGVVTDQQQ  300
QTGHYQESKK ASNVVKNKYD VPPGFEVDAD VDVDADIGDN EPEYHVLRRE RRRSPRKVLE  360
DPVPCSNGSR GTGGDRDRRD LGWNRDQDWE RLYHGESPDL VRERRREEVR GNKKDAEVRL  420
EKAGGGKQYG SCSGEDKSLR PLVTYDALPL ARQHVEQTFI TWLNSKLRKP TEEEMEYHKT  480
QFSTNGKTCY WSGIPGSELL AQYEEACPLK QAPDKEALEL VLRTILHVEA CPMRPNDVLW  540
CLVWQDCMKI EHLPGYHDMD VARIKREMRR PRSPVVGVEE SDRSLRQRFT YC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6XQP2	0.0	A0A2R6XQP2_MARPO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51600.2	2e-08	ZIM-LIKE 2

Link Out ? help Back to Top
Phytozome	Mapoly0005s0077.1.p