PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0003s0271.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

GRAS

Protein Properties

Length: 679aa MW: 74345.1 Da PI: 5.7213

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0003s0271.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	415.7	4.2e-127	298	678	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 lv+lL++cA+a+++gd + a+a++ ++++ +p++ pm ++aa+f+eAL +r+++ +++ +a+ +s++ a ++ f++ Mapoly0003s0271.1.p 298 LVHLLMACAKAIQAGDRHSAEATVRKIKQAvsMAPQQsaGPMIKVAAHFAEALTRRIYGVSPNFQEAMLSSAS-------MKADFENFYD 380 68*************************94422333246***************55555544444433.......3444577* PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176 +sP+l+f+h+ +NqaIlea+ g+++vH+iDf +++GlQWp+L+qaLa Rp+gpp+l++Tg+g+pe g +++l+ +g+ La +A el+v+f Mapoly0003s0271.1.p 381 LSPYLRFAHFSTNQAILEAFTGANHVHVIDFHLNYGLQWPCLMQALAMRPGGPPTLKLTGIGPPELGGEDSLQDIGRSLATMAGELNVNF 470 **************************************************************************************** PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 +f+ +va+rl+d+++++L+v+pgE++aVn+++qlh+ll+ ++s e devL++vksl+Pkvv+++eqea+hn ++Fl+rf+eal++ys+ Mapoly0003s0271.1.p 471 KFRGVVAERLDDIQPWMLQVQPGEVVAVNSIFQLHKLLHAEGSNEAGLDEVLRAVKSLNPKVVTIAEQEANHNIHNFLDRFVEALHFYSS 560 ************************************************************************************** PP GRAS 267 lfdsleak..........lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346 +fdslea+ +++ +e+ k +++lgrei+n+vacega+r+erhe+le W+ rl++aG++++++ ++a+++a+lll+ +++ Mapoly0003s0271.1.p 561 MFDSLEASkrptdssdprTAHQRQEMYKGAERYLGREICNIVACEGAKRVERHENLEMWKLRLRNAGYQQLRMPSTAYNTASLLLNLYSG 650 *8887888888665555557788888999***************************************************** PP GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374 +gyrve++ g+++l+W ++pL+++SaW+ Mapoly0003s0271.1.p 651 QGYRVEDNCGCITLCWDGKPLLTASAWQ 678 *************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.054	272	658	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-124	298	678	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MNYGGAPDFQ LASFLDGLDA MMISMDQGGG NQQSSSPSPY ANAGVSYGQS PSPVSQSSFV 60 DVSSVQSPPD SVYNDTLDSE IAQSDMSALT QNFVVNEPWF DDSGNLVSFP ISSDAPSKNS 120 AIGRSPAPAG LDQSYTQDLF EQQFCHEEED MRPQFPSHSF GSAYGFNNTP FSLLKGTDTA 180 SSVGSCGNGS SGSSLSRGRS VGSVSSPRSF GVAPQRMLLP PLRSNSSTRI QAYPNSIFQQ 240 EPGVMKWSAQ PAQASAPQQQ QQQQQQQRQQ QQQQQQQQAL RRPALPVEPE QEDSGLRLVH 300 LLMACAKAIQ AGDRHSAEAT VRKIKQAVSM APQQSAGPMI KVAAHFAEAL TRRIYGVSPN 360 FQEAMLSSAS MKADFENFYD LSPYLRFAHF STNQAILEAF TGANHVHVID FHLNYGLQWP 420 CLMQALAMRP GGPPTLKLTG IGPPELGGED SLQDIGRSLA TMAGELNVNF KFRGVVAERL 480 DDIQPWMLQV QPGEVVAVNS IFQLHKLLHA EGSNEAGLDE VLRAVKSLNP KVVTIAEQEA 540 NHNIHNFLDR FVEALHFYSS MFDSLEASKR PTDSSDPRTA HQRQEMYKGA ERYLGREICN 600 IVACEGAKRV ERHENLEMWK LRLRNAGYQQ LRMPSTAYNT ASLLLNLYSG QGYRVEDNCG 660 CITLCWDGKP LLTASAWQ*

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MNYGGAPDFQ LASFLDGLDA MMISMDQGGG NQQSSSPSPY ANAGVSYGQS PSPVSQSSFV  60
DVSSVQSPPD SVYNDTLDSE IAQSDMSALT QNFVVNEPWF DDSGNLVSFP ISSDAPSKNS  120
AIGRSPAPAG LDQSYTQDLF EQQFCHEEED MRPQFPSHSF GSAYGFNNTP FSLLKGTDTA  180
SSVGSCGNGS SGSSLSRGRS VGSVSSPRSF GVAPQRMLLP PLRSNSSTRI QAYPNSIFQQ  240
EPGVMKWSAQ PAQASAPQQQ QQQQQQQRQQ QQQQQQQQAL RRPALPVEPE QEDSGLRLVH  300
LLMACAKAIQ AGDRHSAEAT VRKIKQAVSM APQQSAGPMI KVAAHFAEAL TRRIYGVSPN  360
FQEAMLSSAS MKADFENFYD LSPYLRFAHF STNQAILEAF TGANHVHVID FHLNYGLQWP  420
CLMQALAMRP GGPPTLKLTG IGPPELGGED SLQDIGRSLA TMAGELNVNF KFRGVVAERL  480
DDIQPWMLQV QPGEVVAVNS IFQLHKLLHA EGSNEAGLDE VLRAVKSLNP KVVTIAEQEA  540
NHNIHNFLDR FVEALHFYSS MFDSLEASKR PTDSSDPRTA HQRQEMYKGA ERYLGREICN  600
IVACEGAKRV ERHENLEMWK LRLRNAGYQQ LRMPSTAYNT ASLLLNLYSG QGYRVEDNCG  660
CITLCWDGKP LLTASAWQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-58	290	677	11	378	Protein SCARECROW
5b3h_A	1e-58	290	677	10	377	Protein SCARECROW
5b3h_D	1e-58	290	677	10	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024361039.1	1e-146	DELLA protein GAI-like
TrEMBL	A0A2R6XTJ2	0.0	A0A2R6XTJ2_MARPO; Uncharacterized protein
STRING	PP1S12_244V6.1	1e-143	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1251	15	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	1e-120	RGA-like 2

Link Out ? help Back to Top
Phytozome	Mapoly0003s0271.1.p