PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0001s0385.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family GRAS
Protein Properties Length: 673aa    MW: 74185.6 Da    PI: 4.9413
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0001s0385.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS380.12.8e-1163046714374
                 GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          +L+ecA+avs +d ++a++l++rl+el+sp+gd  qRl++yf+eAL arl++++ +ly al+++  s     + l+a+klf+++ P++k+
  Mapoly0001s0385.1.p 304 VLMECAQAVSRDDVREAHQLINRLRELSSPNGDGGQRLVHYFVEALVARLSGTGGRLYTALSSNMPS---AMDMLKAYKLFVQCNPLPKI 390
                          79***********************************************************999998...899***************** PP

                 GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                          +h  aN++I +av+g+++vHi+Df+i +G+QWp+L++aL+sRpegpp+lRiTg++ +++g  s+e++eetg+rLa+ A+ +g++fe+++ 
  Mapoly0001s0385.1.p 391 AHYFANKTIFDAVKGAKAVHIVDFGILYGVQWPCLIHALSSRPEGPPHLRITGIDFAQPGfkSTERIEETGRRLAEKARLMGIEFEYQA- 479
                          ********************************************************999999***************************. PP

                 GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a ++e++++ +L+++++E+l+Vn++++l +llde+v  +s+r+ +L+ + sl+P+++v    +a +n++ F++rf ea+++y+a+fd++
  Mapoly0001s0385.1.p 480 IAGKWEQIQPAQLNLRQEEVLIVNSMFRLRNLLDETVMASSPRKMLLNKIHSLNPELFVTGIVNAGYNTPFFMARFREAVNHYAAVFDAI 569
                          799*************************************************************************************** PP

                 GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                          ++ +p+ +e r + Ere+lgrei nv+aceg er er e++ +W++r+++aGFk+ pl++ + ++ak +l+ ++++ + v +  ++++ g
  Mapoly0001s0385.1.p 570 HSAVPPIAELRLFSEREILGREILNVIACEGVERLERAENFTQWQSRITNAGFKQQPLDSAVIDKAKEILNPFHKE-FGVTQVGNWMLSG 658
                          **************************************************************************55.************* PP

                 GRAS 362 WkdrpLvsvSaWr 374
                          Wkdr L  ++aW+
  Mapoly0001s0385.1.p 659 WKDRVLHGLTAWK 671
                          ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.101275652IPR005202Transcription factor GRAS
PfamPF035149.5E-114304671IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MGMSNKKGSW TGNDKGSGDG KQRDRSRNMT ADTPLAAQLQ QAWLQTQLPR RNVPKLDFLS  60
PVPSPDLSMS RSSSASYPSS QSVSPDSDTL TSHSEAGSYS PVESSTTNEY NYNYEQDDPM  120
NDPLLSYISD MLMEEDLCEK KCMFVECSAY QAMTKELAEL IGDPSAADDL YCKDYEDGAA  180
EELSGVTSWV DEVLDSHPSQ YFDNYEHENS LESSAGVVDD SRGASPTDVL ASCASGKTAG  240
GAIRVNVIPQ PGGISGVRAA REEVVGLGVE CTYLDADTPR LTPGLDYAAP GKSGIDSLTD  300
LYPVLMECAQ AVSRDDVREA HQLINRLREL SSPNGDGGQR LVHYFVEALV ARLSGTGGRL  360
YTALSSNMPS AMDMLKAYKL FVQCNPLPKI AHYFANKTIF DAVKGAKAVH IVDFGILYGV  420
QWPCLIHALS SRPEGPPHLR ITGIDFAQPG FKSTERIEET GRRLAEKARL MGIEFEYQAI  480
AGKWEQIQPA QLNLRQEEVL IVNSMFRLRN LLDETVMASS PRKMLLNKIH SLNPELFVTG  540
IVNAGYNTPF FMARFREAVN HYAAVFDAIH SAVPPIAELR LFSEREILGR EILNVIACEG  600
VERLERAENF TQWQSRITNA GFKQQPLDSA VIDKAKEILN PFHKEFGVTQ VGNWMLSGWK  660
DRVLHGLTAW KP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-5630767224379Protein SCARECROW
5b3h_D3e-5630767224379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9XE581e-129SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2R6XWD50.0A0A2R6XWD5_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-131SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]