PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0001s0259.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 557aa    MW: 60283.5 Da    PI: 7.135
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0001s0259.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12485531655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L+el+P+    +++  + a++L +AveY+k+Lq
  Mapoly0001s0259.1.p 485 SIAERVRRTRISERMRKLQELVPNM---DKQQTNTADMLDEAVEYVKQLQ 531
                          689*********************8...899******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926479530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-15482542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-12483535No hitNo description
Gene3DG3DSA:4.10.280.103.3E-15484542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9485531IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12485536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MLGPGGSTRG YSDQSGGKPL MPLQALNLPA QDQGGPHLTP CSPMLPKNGA RRPGLWGATS  60
SNGPQKDWIN GRSGMMEMDF RPMPSDYPSA LLDQTSAPLT DPYRVPGGLA RYHSAPSALL  120
QSLADFQQDV VPRPMSQLDN SLSSFFTDAE LPPLNPSTDT SLEQMETEHS SNSVYDKYML  180
NTRKFDRLGK PGGHYDQLGP VNGPTKPPII QSVYKHSMEV LHENLAGNPQ MNSQLNTEMN  240
SQLNAQMNSQ MNSQMPSSMG LSSSMGLSST MGLLGQQDNT HAGQMSLGNL GQSIGNDFCV  300
GSSGTLGGLT STRLAHKGNN NNSLLRQSSS PAGLLAQLSI DVQAMAGAAK SEKPSLSSPL  360
AHSPAESLSG GTSEENGGAG TGPGTPGMMS RMDVGWEDAQ SYLNSWDNTN FAARKRFRDM  420
EIDPLGDPFM ADPLRSSQDH NPPPLTRHMS LPTQKSKNST MTDEILQSVP CRIRAKRGCA  480
THPRSIAERV RRTRISERMR KLQELVPNMD KQQTNTADML DEAVEYVKQL QRQVQELTES  540
KCKGNCRERK DNNPPS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XVV20.0A0A2R6XVV2_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.14e-38bHLH family protein