PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0001s0061.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | MYB | ||||||||
Protein Properties | Length: 1233aa MW: 135610 Da PI: 5.0827 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.7 | 1.9e-16 | 564 | 610 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd l ++v+++G +W++Ia ++ gR +kqc++rw+++l Mapoly0001s0061.3.p 564 KGQWTPEEDRYLMELVERHGHQRWSLIATYLK-GRIGKQCRERWHNHL 610 799****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.7e-17 | 616 | 658 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r+ W teE+e lv a+++lG++ W+ Ia++++ gRt++ +k++w+ Mapoly0001s0061.3.p 616 RDGWNTEEEEALVSAHNKLGNR-WADIAKMIP-GRTENAIKNHWN 658 567*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 30.862 | 559 | 614 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.12E-30 | 561 | 657 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-15 | 563 | 612 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-27 | 565 | 617 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.49E-14 | 567 | 610 | No hit | No description |
Pfam | PF13921 | 1.0E-17 | 567 | 627 | No hit | No description |
SMART | SM00717 | 8.7E-16 | 615 | 663 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.42 | 615 | 665 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-20 | 618 | 664 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.67E-12 | 619 | 658 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1233 aa Download sequence Send to blast |
MTGGKNSLIE LDTLGLGYAL GHLLYCPSTE VLPTCLETQS GVNLSGSSEV SHSESGFERQ 60 STLFHEEASN PQHPISLQNF QRRLSLTANF SSDYRDLHGE RKSVFEIYRT VKGPRRGRKR 120 DKCTFEQKFK LASDWQSPGI DKAETHFPSL VAEMDSEWGS ELTKEGETQP VAKNPVELQP 180 IEVASWWCEK RAKTNKHMDY QSNFGLHQAE WPNGEGSLKR PLVWKNLPEK KALSAEGASE 240 AYKQSTTLGL DGRDSRNLDP ALNTLEIVSR NKDGPNEGQA FASICSRAVE ASPSTHFQTT 300 DHDINNSSIG SLSLGTVDCQ EGTQDLNGYW KHLQERRHLN SVERIERLPE FENSQSSCGK 360 EANIDGNTSQ LQQLMGIQEE NSLRCLDMGA GEASDRTNCV EAPGKDDIRR LSADYGDGFD 420 AGESWSQGVC VGPGDCYLLT SVHKAQLLDL QLEENQRYRQ QQSSERSRES LSLDNDARLD 480 CGQSNKRDAE EDGSSPGGFG GLVTQRQNYF ADECSLEMQR TSGEQLTARE AYEKALNEQH 540 DDMPGKRMFK RSSKGGPRRP NIIKGQWTPE EDRYLMELVE RHGHQRWSLI ATYLKGRIGK 600 QCRERWHNHL RPDIKRDGWN TEEEEALVSA HNKLGNRWAD IAKMIPGRTE NAIKNHWNAT 660 MRRKDLRRKH RKAVDGSTDG LEVVPRCTVL RDYQQKVIQF TEQKGSSATP ENGRDRLRSL 720 EEAHARTPDL DSPQVTCDST AGWSYDRSVG SNQLEDNSYQ QLETRTNPDM SPAEVDQLLQ 780 MIWAQDQGEE GVQFATSLNP QGNLVLQANT FGPFGAFHGP FTLQTRVSVW GQGTGSGSYS 840 SPQVTVWGGG WGGSSMYDSG TTQATGGAAG AEMWDGVTST FPPAGYVASS SPSSKPLKPD 900 SQHGESCPPA LTPCGCCNEA NFHSIPQDLQ SLNITRAHFV SCSETGRDGH SMPYPLEAEQ 960 SSTCKGSIME APAVLEANSK ATAGESNPLT AQPFQIENLL PSPLNDVPGA HACFQRSSLS 1020 LDYSQNFAGA QSQSTACISE LLAHEKVLES LANYNLSVAA ENTKMIHGHQ LQQPSSTTLQ 1080 EGISVEFNTC QALPLDAFST SAAELINVQS VPPYQPAPSG DYDKSESRSN DATHVLNHSG 1140 AVMDMCFLHE NITGRGNSNS NAGPPFSMVS QEDWMRSNFV EHAAGEQAKG GVVSQYGEDL 1200 VEFTPIPVDL GYYVRKGGVC CGWGDEYGSC GF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-45 | 562 | 664 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 5e-45 | 562 | 664 | 2 | 104 | C-Myb DNA-Binding Domain |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00567 | DAP | Transfer from AT5G58850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6XV65 | 0.0 | A0A2R6XV65_MARPO; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 1e-52 | myb domain protein 119 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0001s0061.3.p |