PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0001s0061.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 1233aa    MW: 135610 Da    PI: 5.0827
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0001s0061.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.71.9e-16564610148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd  l ++v+++G  +W++Ia ++  gR +kqc++rw+++l
  Mapoly0001s0061.3.p 564 KGQWTPEEDRYLMELVERHGHQRWSLIATYLK-GRIGKQCRERWHNHL 610
                          799****************************9.*************97 PP

2Myb_DNA-binding54.52.7e-17616658145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          r+ W teE+e lv a+++lG++ W+ Ia++++ gRt++ +k++w+
  Mapoly0001s0061.3.p 616 RDGWNTEEEEALVSAHNKLGNR-WADIAKMIP-GRTENAIKNHWN 658
                          567*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.862559614IPR017930Myb domain
SuperFamilySSF466896.12E-30561657IPR009057Homeodomain-like
SMARTSM007171.3E-15563612IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-27565617IPR009057Homeodomain-like
CDDcd001673.49E-14567610No hitNo description
PfamPF139211.0E-17567627No hitNo description
SMARTSM007178.7E-16615663IPR001005SANT/Myb domain
PROSITE profilePS5129419.42615665IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-20618664IPR009057Homeodomain-like
CDDcd001676.67E-12619658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1233 aa     Download sequence    Send to blast
MTGGKNSLIE LDTLGLGYAL GHLLYCPSTE VLPTCLETQS GVNLSGSSEV SHSESGFERQ  60
STLFHEEASN PQHPISLQNF QRRLSLTANF SSDYRDLHGE RKSVFEIYRT VKGPRRGRKR  120
DKCTFEQKFK LASDWQSPGI DKAETHFPSL VAEMDSEWGS ELTKEGETQP VAKNPVELQP  180
IEVASWWCEK RAKTNKHMDY QSNFGLHQAE WPNGEGSLKR PLVWKNLPEK KALSAEGASE  240
AYKQSTTLGL DGRDSRNLDP ALNTLEIVSR NKDGPNEGQA FASICSRAVE ASPSTHFQTT  300
DHDINNSSIG SLSLGTVDCQ EGTQDLNGYW KHLQERRHLN SVERIERLPE FENSQSSCGK  360
EANIDGNTSQ LQQLMGIQEE NSLRCLDMGA GEASDRTNCV EAPGKDDIRR LSADYGDGFD  420
AGESWSQGVC VGPGDCYLLT SVHKAQLLDL QLEENQRYRQ QQSSERSRES LSLDNDARLD  480
CGQSNKRDAE EDGSSPGGFG GLVTQRQNYF ADECSLEMQR TSGEQLTARE AYEKALNEQH  540
DDMPGKRMFK RSSKGGPRRP NIIKGQWTPE EDRYLMELVE RHGHQRWSLI ATYLKGRIGK  600
QCRERWHNHL RPDIKRDGWN TEEEEALVSA HNKLGNRWAD IAKMIPGRTE NAIKNHWNAT  660
MRRKDLRRKH RKAVDGSTDG LEVVPRCTVL RDYQQKVIQF TEQKGSSATP ENGRDRLRSL  720
EEAHARTPDL DSPQVTCDST AGWSYDRSVG SNQLEDNSYQ QLETRTNPDM SPAEVDQLLQ  780
MIWAQDQGEE GVQFATSLNP QGNLVLQANT FGPFGAFHGP FTLQTRVSVW GQGTGSGSYS  840
SPQVTVWGGG WGGSSMYDSG TTQATGGAAG AEMWDGVTST FPPAGYVASS SPSSKPLKPD  900
SQHGESCPPA LTPCGCCNEA NFHSIPQDLQ SLNITRAHFV SCSETGRDGH SMPYPLEAEQ  960
SSTCKGSIME APAVLEANSK ATAGESNPLT AQPFQIENLL PSPLNDVPGA HACFQRSSLS  1020
LDYSQNFAGA QSQSTACISE LLAHEKVLES LANYNLSVAA ENTKMIHGHQ LQQPSSTTLQ  1080
EGISVEFNTC QALPLDAFST SAAELINVQS VPPYQPAPSG DYDKSESRSN DATHVLNHSG  1140
AVMDMCFLHE NITGRGNSNS NAGPPFSMVS QEDWMRSNFV EHAAGEQAKG GVVSQYGEDL  1200
VEFTPIPVDL GYYVRKGGVC CGWGDEYGSC GF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-455626642104C-Myb DNA-Binding Domain
1msf_C5e-455626642104C-Myb DNA-Binding Domain
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XV650.0A0A2R6XV65_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-52myb domain protein 119