PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0001s0028.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

NF-YC

Protein Properties

Length: 291aa MW: 32555.1 Da PI: 4.599

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0001s0028.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.5	6.4e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++ade+v +i+ +Pvl+ska elf+ +l +++ + +t+ ++++v++ ++fdfl +iv + Mapoly0001s0028.1.p 6 DTRFPAARIKKIMQADEEVGKIAMATPVLISKALELFLQNLCDKTYEITLRRGAKTMSALHLKQCVQQNTVFDFLEEIVAK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.2E-26	2	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.92E-20	3	88	IPR009072	Histone-fold
Pfam	PF00808	3.2E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MKKKLDTRFP AARIKKIMQA DEEVGKIAMA TPVLISKALE LFLQNLCDKT YEITLRRGAK 60 TMSALHLKQC VQQNTVFDFL EEIVAKVPDI GTDINSEERN GGRRRKVSDG DNDDSEEEDV 120 VKRPKAEIQP TTPGRGRGRG RGRGRGRNGT RVHVEKFEES ETDLSPPPPL ERSAERVTLE 180 TIAVRAKEED APTLEPVASS ATGRPQIRFE FDLNLDLDEN GDVATVAHHK EVKEEEEEQE 240 SESEQQKPPP SWPPTLSVDI PQLGVGHLQD RHTTMHPDED DYDCEDDEDG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	5e-24	2	72	5	75	Transcription Regulator NC2 alpha chain

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	145	RGRGRGRGRG
2	136	146	RGRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024369582.1	1e-82	dr1-associated corepressor-like isoform X2
TrEMBL	A0A176VEK2	0.0	A0A176VEK2_MARPO; Uncharacterized protein
TrEMBL	A0A2R6XV13	0.0	A0A2R6XV13_MARPO; Uncharacterized protein
STRING	PP1S112_139V6.1	6e-81	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2179	16	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	3e-49	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Mapoly0001s0028.1.p