PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S099400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 416aa    MW: 45016.2 Da    PI: 4.8129
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S099400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.2e-06444539
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                       +C+ +++++   +C+++  +lC +C  + H+       H++
  Manes.S099400.1.p  4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                       7*****************************65677777776 PP
2zf-B_box23.98.4e-084689441
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                        +C++++++++ + C++ +  lC++C    H +      H++++
  Manes.S099400.1.p 46 LICERCNSQPALFRCFEERISLCQNCDWMVHGNssstttHKRQT 89
                       68*************************99995588888888766 PP
3CCT61.13.6e-21358401144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        R +a++RYkeK+ktRkFeK++rY+sRKa+A+ R RvKGrFvk+ 
  Manes.S099400.1.p 358 RSNAVMRYKEKKKTRKFEKRVRYASRKARADVRRRVKGRFVKAG 401
                        899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.527147IPR000315B-box-type zinc finger
SMARTSM003365.1E-8447IPR000315B-box-type zinc finger
CDDcd000211.78E-7447No hitNo description
PROSITE profilePS501198.8734390IPR000315B-box-type zinc finger
CDDcd000211.53E-54790No hitNo description
SMARTSM003360.594890IPR000315B-box-type zinc finger
PfamPF062031.0E-15358400IPR010402CCT domain
PROSITE profilePS5101715.378358400IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNSQPALFRC  60
FEERISLCQN CDWMVHGNSS STTTHKRQTI NCFSGCPSAS ELSSIWSFVL NFPSVGESTC  120
EQELGLMSIA ENSSTGAWGP NENIINQSVS GAVAADEALD IAKSSVYGGT SSMPELISLP  180
NNTEKPVGSA NAPLSKLCCP GTKGPAVSGD DDLYEDFNMD EVDLNIENYE ELFGFTLNNS  240
EELFENGGID SLFGTKDISA ADSNCQGAGE EGLSVGLVNT MQQACSNAAS ADSMMSAKTE  300
PVLCFTTRQG HSSLSFSGLT GESSAGDYQD CGASSMLLMG EPPWCPPCPE SSCPSANRSN  360
AVMRYKEKKK TRKFEKRVRY ASRKARADVR RRVKGRFVKA GDNYDYDPLS QIRSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S099400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603135.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-152COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A199U9E80.0A0A199U9E8_MANES; Uncharacterized protein
STRINGcassava4.1_027980m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-115CONSTANS-like 9