PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S084100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 363aa    MW: 40739.4 Da    PI: 4.4227
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S084100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.44.5e-26179352128
                NAM  52 kaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++e++wyfF++r+kky++g+r++r a + gyWkatg+dk++l+ +++  g +k+L +y+gr+++g+kt+W mhey l
  Manes.S084100.1.p  17 RERESQWYFFTSREKKYPNGSRPKRnAGELGYWKATGTDKAILD-GKKPLGFRKSLDYYEGRQRDGTKTNWKMHEYLL 93 
                        34677********************77889**************.999****************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.0461126IPR003441NAC domain
SuperFamilySSF1019411.57E-3017125IPR003441NAC domain
PfamPF023653.2E-112192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MFFFSLCFAA ETYKLNRERE SQWYFFTSRE KKYPNGSRPK RNAGELGYWK ATGTDKAILD  60
GKKPLGFRKS LDYYEGRQRD GTKTNWKMHE YLLHQSLVPS GATARGKNPL QPKQLDEWVL  120
CKIYNNKAED KKNNNDEDEG TLNIAETEIP KADDVSTAQP LLCDNSLMIS QEYENGYGSY  180
LLPPLWSDPP QPILDNVDND PPPMNNTFNN NFAYNVQPIQ ICQPPSHYSN GFQPMYGCGD  240
QVSDISCMET AAMNDHFLMP TGQELIHGRG DQVWDINSIQ TTTMNDHLYV PAEEPVFGCG  300
NQVSDINYMV TADMNGYLLV IAEEPSPLLE PAAAEKSTRE FDAQPSSSNQ PMPGGGEAEL  360
PI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-272013273174NAC domain-containing protein 19
3swm_B2e-272013273174NAC domain-containing protein 19
3swm_C2e-272013273174NAC domain-containing protein 19
3swm_D2e-272013273174NAC domain-containing protein 19
3swp_A2e-272013273174NAC domain-containing protein 19
3swp_B2e-272013273174NAC domain-containing protein 19
3swp_C2e-272013273174NAC domain-containing protein 19
3swp_D2e-272013273174NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S084100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618824.10.0protein BEARSKIN1-like
TrEMBLA0A199U9P80.0A0A199U9P8_MANES; Uncharacterized protein
STRINGcassava4.1_030551m1e-150(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15078714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.13e-30NAC-like, activated by AP3/PI