PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S048400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 272aa    MW: 30804.8 Da    PI: 9.0084
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S048400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.1e-08163210455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR +iN+++  L+e++P +    sk +  a +L + ++Y++sLq
  Manes.S048400.1.p 163 SHSLAERVRRGKINEKIRCLQEIVPGC----SKTMGMAIMLDEIINYVRSLQ 210
                        8*************************9....788999*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-16157227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-8157214No hitNo description
PROSITE profilePS5088814.5159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-15160220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-6163210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-8165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEFTADLQGF RPSFPFLDIN PTVESMNQFT DSFTSNLDPI QTFNTYMPFS TDYSFTHQAL  60
AAAEFPGNLE GKFPSIFRQN KQNIVFPVSH GQQYKGEFLE SRKRKAMDVS ESSSLNSSSL  120
QVSQIGKGKT SSRRGRRDKA KKEEKKLKEV VHVRARRGEA TDSHSLAERV RRGKINEKIR  180
CLQEIVPGCS KTMGMAIMLD EIINYVRSLQ NQIEFLSMKL TAASAFYDFN AEADDIEIMQ  240
KAKAQEAKEM VRMTRDGYGG LSDDHHQTWS L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135142RRDKAKKE
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S048400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602558.10.0transcription factor BEE 3-like isoform X1
SwissprotQ8GWK73e-64BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A199UB690.0A0A199UB69_MANES; Uncharacterized protein
STRINGcassava4.1_021245m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.13e-57BR enhanced expression 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]