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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.S034200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 320aa MW: 36175.1 Da PI: 4.3187 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6.1e-17 | 109 | 158 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 s ykGVr+++ +g++ AeIrd + r r++lg+++t+eeAa+a+ + +++e Manes.S034200.1.p 109 SNYKGVRRRP-WGKYIAEIRDpF-----RkVRIWLGTYDTEEEAAAAYRKKEEEFE 158 57********.**********76.....45******************99988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.01E-16 | 109 | 155 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.62E-22 | 109 | 150 | No hit | No description |
Pfam | PF00847 | 2.6E-10 | 109 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.584 | 110 | 169 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-16 | 110 | 175 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-20 | 110 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 111 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MPGLRGPILD QNLNSEEEKK KLGMEKSLRK VRIIYHDPEA TDSSSDEDEG FIERIDRLST 60 GKRIVREITL SILPCEPVAE DSSQHNSNGD KVRSTTNCGE NKKTRMASSN YKGVRRRPWG 120 KYIAEIRDPF RKVRIWLGTY DTEEEAAAAY RKKEEEFERM MEENKLNSSL NDSKAVPEQS 180 GDMFSHPSPS SVLDVSNTSS QVHGVESSIK EEISLQKAVK ECSLENLVED YFTEDLSISK 240 FWDEPLLSPS ISQDFLGIDC YPEFGNDFEK FFDGAEDFFM AKSNDEVGDF SLDGVLDLPN 300 IEELETLAFV EDTLNFACP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.S034200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021602398.1 | 0.0 | ethylene-responsive transcription factor WIN1-like | ||||
TrEMBL | A0A199UBN1 | 0.0 | A0A199UBN1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023899m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13451 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 5e-18 | cytokinin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.S034200.1.p |