PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.S014100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 302aa    MW: 33463.2 Da    PI: 10.0548
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.S014100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.6e-11555146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                       +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w++
  Manes.S014100.1.p  5 KQKWTAEEEAALKAGVIKHGAGKWRTILKDPEfsgvlYMRSNVDLKDKWRN 55
                       79***********************************99**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.758158IPR017930Myb domain
SuperFamilySSF466896.14E-16271IPR009057Homeodomain-like
SMARTSM007176.0E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-13456IPR009057Homeodomain-like
PfamPF002498.2E-8555IPR001005SANT/Myb domain
CDDcd116607.54E-18656No hitNo description
SuperFamilySSF467857.07E-17119197IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.9E-14119184IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.9E-15120191IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.072121189IPR005818Linker histone H1/H5, domain H15
PfamPF005381.9E-8126182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILKDPEFSGV LYMRSNVDLK DKWRNMSVMA  60
NGWSSREKSK LAVKRVHHHV PKQEENPMSL YTVAQSDEDV SDTKSTVIAN SLMQTGGPKR  120
TTVRLDNLIM EAITSLKEPG GSNKTTITAY IEEQYWPPHD FKRILSAKLK YLTSNGKLIK  180
VKRKYRIAPT STFSDRRGNS SMSFLEGRER ISPRVERDDF NMLTKSQIDL ELAKMRMMTA  240
QEAAAAAARA VAEAEAAIAE AEEAAREAEA AEADAEAAQA FAEAAMKTLK SRTPPNMMVR  300
A*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.S014100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602114.10.0telomere repeat-binding factor 1-like
RefseqXP_021602115.10.0telomere repeat-binding factor 1-like
SwissprotQ8VWK41e-103TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A199UCC80.0A0A199UCC8_MANES; Uncharacterized protein
STRINGcassava4.1_012709m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-102telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]