PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.18G118900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 194aa MW: 21114.5 Da PI: 5.3214 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.7e-19 | 21 | 71 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr +k +g+Wv+eIr+p gk++r++lg+f+t+e+Aa a++ a++ ++g Manes.18G118900.1.p 21 SSYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFDTPEMAATAYDVAALHFRG 71 67*****999.**********8...557***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-12 | 21 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.22E-33 | 21 | 81 | No hit | No description |
SuperFamily | SSF54171 | 5.49E-23 | 21 | 80 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 22 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-40 | 22 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.065 | 22 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MQEQTRNHGC GGGGGGGGTS SSYRGVRKRK WGKWVSEIRE PGKKTRIWLG SFDTPEMAAT 60 AYDVAALHFR GREAKLNFPE LVNDLPKPES SNAEDIRMAA HEAALRIRTP MKEPESGGGG 120 GSSGNVGSSN SVVGPVTVRL SQSQIQAINE SPLDSPKMWM QMAMVEDPMM FSHDVGEDDD 180 WNYNMQNDSL WDP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 12 | 83 | 4 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.18G118900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021601843.1 | 1e-142 | ethylene-responsive transcription factor ERF021 | ||||
Swissprot | Q9C9I2 | 1e-61 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | A0A2C9U2R9 | 1e-141 | A0A2C9U2R9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_017419m | 1e-118 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1777 | 31 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 7e-60 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.18G118900.1.p |