PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G093800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 411aa    MW: 43467.9 Da    PI: 6.257
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G093800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.7e-20174223255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Manes.18G093800.1.p 174 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 223
                          7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.646174231IPR001471AP2/ERF domain
PfamPF008471.4E-13174223IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-22174232IPR016177DNA-binding domain
SMARTSM003801.9E-36174237IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-32174232IPR001471AP2/ERF domain
PRINTSPR003671.5E-11175186IPR001471AP2/ERF domain
CDDcd000181.88E-14182233No hitNo description
PRINTSPR003671.5E-11197213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MLNQPVHVTQ SLAAFPGHGS TGEMSAMVSA LTRVVSGQGA GDWGYGTGFG GAITSSYGGF  60
GSPAGVYSSS SSSSLSPPFS AYSSTSGSGS GFWIGQKRGR EEEGAVQLIE SEPRVYRGFG  120
DFTSSHGDSS SSGATLTEEP AASIIVPTAT APAAPPTSST ETVSYEETGE RRRRYRGVRQ  180
RPWGKWAAEI RDPHKAARVW LGTFETAEAA ARAYDEAALR FRGNRAKLNF PENVRVLPPP  240
MQNVPISQIP IGLPQPSQLL PLSSQPPQEP QQPTTLPPQF FLSQADTMRD YWEYSQLLQS  300
TGDLHGFQPS SLMEQMFYNQ QLASLQSTVL PSSSRSSSAS LSSSISAPPF ATSSSGSLSS  360
SSSSSASFPL ILAGQQLGYF RPPRNQNPPT GSDLPVPPWS DSTDHPSSTG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-23173234163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174ERRRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G093800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600347.10.0ethylene-responsive transcription factor ABR1-like isoform X1
RefseqXP_021600348.10.0ethylene-responsive transcription factor ABR1-like isoform X2
TrEMBLA0A2C9U1P20.0A0A2C9U1P2_MANES; Uncharacterized protein
STRINGcassava4.1_007457m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-19ethylene response factor 110