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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.18G091700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Trihelix | ||||||||
Protein Properties | Length: 616aa MW: 67856.5 Da PI: 7.0011 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.5 | 2.1e-29 | 69 | 152 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m++ +r+++lk+plWeevs+k++e g+ rs+k+Ckek+en+ k++k++keg+ ++++++ t+++fdql+ Manes.18G091700.1.p 69 RWPRQETLALLKIRSDMDSVFRDSSLKGPLWEEVSRKLAELGYYRSAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFDQLQ 152 8********************************************************************975544..6******98 PP | |||||||
2 | trihelix | 102.2 | 4.1e-32 | 433 | 517 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev +Li++r+ ++++++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke+ kkr se+s+tcpyf+ql+ Manes.18G091700.1.p 433 RWPKVEVEVLINLRTTLDTKYQENGPKGPLWEEISAGMQKLGYNRSAKRCKEKWENINKYFKKVKESTKKR-SEDSKTCPYFHQLN 517 8*********************************************************************8.89999*******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.957 | 62 | 126 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.064 | 66 | 128 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.61E-24 | 68 | 133 | No hit | No description |
Pfam | PF13837 | 9.3E-20 | 68 | 154 | No hit | No description |
PROSITE profile | PS50090 | 7.248 | 426 | 490 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.9E-4 | 430 | 492 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-4 | 431 | 489 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 4.4E-21 | 432 | 517 | No hit | No description |
CDD | cd12203 | 4.12E-26 | 433 | 497 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MQGDSNTVQT TASVALVSTA TMVPEGGEVG AAGGGGGGGG GGGPNSSGDE DKSIIRVDEG 60 DRMSYGANRW PRQETLALLK IRSDMDSVFR DSSLKGPLWE EVSRKLAELG YYRSAKKCKE 120 KFENVYKYHK RTKEGRTGKS EGKTYRFFDQ LQALETHHHH HQSQLAAAPP PSQQPPLSKP 180 QPPNTTPATL PWSNNPPTAS HVAVPSTTNT ANIITSHNNN GASSADPTIN AMPLSSSHPL 240 NPSQNIIPSF QILTSHLFSS STSSSTASDE GYQETRKRKR KWKDFFERLT KDVMKKQEEL 300 QRKFLETVEK HEHERMAREE AWRMQEMARI NREHELLIQE RTTAAAKDAA VIAFLQKMSG 360 LQNSIRTLDI PVPQPQPPPP VAPALAPAPA LSPAAAPPQP RQPPPAPVVM NLDVSRKDNG 420 QNNAVVSSSS SSRWPKVEVE VLINLRTTLD TKYQENGPKG PLWEEISAGM QKLGYNRSAK 480 RCKEKWENIN KYFKKVKEST KKRSEDSKTC PYFHQLNVLY KEKISKTNEN SANHGGGGHA 540 SVPSTTTMEP LMVRPEQQWP VQNENPSEKL MDHEDDIEDD DDENDGDTEE EDEGGGRGCF 600 EVVASKPTAS LGNGE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 275 | 280 | RKRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.18G091700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021601597.1 | 0.0 | trihelix transcription factor GT-2-like | ||||
TrEMBL | A0A2C9U1R3 | 0.0 | A0A2C9U1R3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_025037m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 1e-120 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.18G091700.1.p |